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Report for CCDS50312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50312.1 Public Mus musculus 18 Seh1l 23 108 98 CCDS HistoryNCBI Gene:72124Re-query CCDS DB by CCDS ID:50312.1Re-query CCDS DB by GeneID:72124See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50312.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025421.8 ENSMUSP00000025421.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025421.8Link to Ensembl Protein Viewer:ENSMUSP00000025421.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025421Re-query CCDS DB by Protein ID:ENSMUSP00000025421
Original member Current member NCBI NM_001039088.1 NP_001034177.1 Accepted alive Link to Nucleotide Sequence:NM_001039088.1Link to Protein Sequence:NP_001034177.1Re-query CCDS DB by Nucleotide ID:NM_001039088Re-query CCDS DB by Protein ID:NP_001034177Link to BLAST:NP_001034177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034177.1 360 Q8R2U0-1 360 100% 0 0

Chromosomal Locations for CCDS 50312.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67775010 67775120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67779205 67779255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67783915 67784061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67784887 67785098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67787156 67787254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67788692 67788832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67789340 67789497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67791864 67792014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67793150 67793162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGTTTGTGGCGCGCAGCATCGCGGCGGACCACAAGGACCTCATCCACGATGTGTCTTTCGACTTCCACG
GGCGCCGGATGGCCACCTGCTCCAGCGATCAGAGCGTCAAGGTGTGGGATAAGAGCGAGAGCGGAGACTG
GCATTGTACAGCTAGCTGGAAGACACATAGTGGATCTGTATGGCGTGTGACGTGGGCTCATCCTGAATTT
GGACAAGTTTTGGCTTCCTGTTCTTTTGACCGAACAGCAGCTGTATGGGAAGAAATAGTGGGAGAATCAA
ACGATAAACTTCGAGGACAGAGTCACTGGGTGAAGAGGACAACTCTAGTGGACAGCAGAACCTCTGTTAC
TGATGTGAAATTTGCTCCCAAACATATGGGTCTGATGTTGGCCACCTGTTCAGCAGATGGTATAGTAAGG
GTCTACGAGGCTCCCGATGTGATGAACCTCAGCCAGTGGTCTCTGCAGCACGAGGTCTCGTGTAAGCTGT
GCTGCAGCTGCATTTCCTGGAACCCTTCCAGCTCTCGTGCTCATCCCCCCATGATCGCTGTGGGAAGTGA
TGATAGCAGTCCAAATTCAATGGCCAAGGTTCAGATTTTTGAATACAATGAAAATACCAGGAAATATGCG
AAAGCTGAGACTCTTATGACAGTCACAGACCCCGTCCATGATATCGCGTTTGCTCCAAATTTGGGAAGAT
CTTTCCACATCCTGGCAGTAGCAACCAAAGATGTAAGAATTTTCACATTAAAACCTCTGAGGAAAGAACT
TACTTCCTCTGGTGGTCCAACAAAATTTGAAATCCATATTGTGGCTCAGTTTGATAATCATAATTCTCAG
GTCTGGAGGGTGAGTTGGAACATAACAGGGACAGTCCTGGCGTCTTCAGGAGATGACGGCTGTGTTAGGT
TGTGGAAAGCTAATTACATGGACAATTGGAAGTGTACTGGTATTTTGAAAGGTAACGGGAGCCCAGTAAA
TGGGAGTTCTCAGCTGGGAAACTCAAATCCTTCACTGAGCTCAAATATTCCAAATCTTCAAAATTCATTA
AATGGAACTTCTGCTAGCAGAAAGCACAGCTGA

Translation (360 aa):
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEF
GQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVR
VYEAPDVMNLSQWSLQHEVSCKLCCSCISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYA
KAETLMTVTDPVHDIAFAPNLGRSFHILAVATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQ
VWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQLGNSNPSLSSNIPNLQNSL
NGTSASRKHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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