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Report for CCDS27379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27379.1 Public Mus musculus 15 Rad1 23 108 98 CCDS HistoryNCBI Gene:19355Re-query CCDS DB by CCDS ID:27379.1Re-query CCDS DB by GeneID:19355See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022856.14 ENSMUSP00000022856.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022856.14Link to Ensembl Protein Viewer:ENSMUSP00000022856.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022856Re-query CCDS DB by Protein ID:ENSMUSP00000022856
Original member NCBI NM_001289447.1 NP_001276376.1 Updated not alive Link to Nucleotide Sequence:NM_001289447.1Link to Protein Sequence:NP_001276376.1Re-query CCDS DB by Nucleotide ID:NM_001289447Re-query CCDS DB by Protein ID:NP_001276376
Current member NCBI NM_001289447.2 NP_001276376.1 Accepted alive Link to Nucleotide Sequence:NM_001289447.2Link to Protein Sequence:NP_001276376.1Re-query CCDS DB by Nucleotide ID:NM_001289447Re-query CCDS DB by Protein ID:NP_001276376Link to BLAST:NP_001276376.1
Original member NCBI NM_011232.3 NP_035362.2 Updated not alive Link to Nucleotide Sequence:NM_011232.3Link to Protein Sequence:NP_035362.2Re-query CCDS DB by Nucleotide ID:NM_011232Re-query CCDS DB by Protein ID:NP_035362
Current member NCBI NM_011232.4 NP_035362.2 Accepted alive Link to Nucleotide Sequence:NM_011232.4Link to Protein Sequence:NP_035362.2Re-query CCDS DB by Nucleotide ID:NM_011232Re-query CCDS DB by Protein ID:NP_035362Link to BLAST:NP_035362.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276376.1 280 Q9QWZ1-1 280 100% 0 0
NP_035362.2 280 Q9QWZ1-1 280 100% 0 0

Chromosomal Locations for CCDS 27379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 10486519 10486716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10487990 10488098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10490256 10490514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10492765 10492863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10493154 10493331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGCCTCTCCTAACCCAGTACAATGAAGAGGAGTACGAACAGTACTGCTTAGTGGCCAGCCTTGACAACG
TTAGGAATCTCTCCACTGTCTTGAAAGCCATTCATTTCAGAGAACACGCCACGTGTTTTGCTACCAAAAA
CGGAATCAAGGTTACAGTGGAGAATGCAAAGTGTGTGCAAGCAAATGCCTTTATTCAGGCTGACGTGTTT
CAGGAATTTGTCATTCAGGAAGAATCTGTTACTTTTCGAATTAACTTAACTATCCTTTTAGACTGTTTAT
CTATTTTTGGATCAAGTCCTACACCAGGGACTTTGACTGCGCTTCGGATGTGTTACCAAGGTTATGGTCA
CCCACTGATGCTATTTCTAGAAGAAGGAGGAGTGGTGACGGTCTGCAAAATTACCACTCAGGAGCCTGAG
GAGACACTGGATTTTGATTTCTGCAGCACCAATGTTATGAATAAAATTATCCTGCAGTCAGAGGGGCTCC
GGGAAGCCTTTTCTGAGCTGGACATGACAGGTGATGTCCTACAGATCACTGTGTCTCCTGACAAGCCCTA
TTTCAGGTTGTCTACTTTTGGAAATGCAGGAAACTCCCATCTTGACTATCCCAAAGATTCCGACTTGGTG
GAAGCCTTTCACTGTGATAAGACCCAGGTCAACAGATACAAGCTGTCGCTACTGAAGCCCTCTACAAAGG
CACTAGCTTTATCCTGTAAAGTGTCTATCCGGACAGATAACCGAGGCTTCCTCTCCTTACAGTACATGAT
TAGAAATGAAGATGGGCAGATATGTTTTGTGGAATATTACTGCTGCCCTGATGAAGAAGTTCCTGAGTCT
TGA

Translation (280 aa):
MPLLTQYNEEEYEQYCLVASLDNVRNLSTVLKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQADVF
QEFVIQEESVTFRINLTILLDCLSIFGSSPTPGTLTALRMCYQGYGHPLMLFLEEGGVVTVCKITTQEPE
ETLDFDFCSTNVMNKIILQSEGLREAFSELDMTGDVLQITVSPDKPYFRLSTFGNAGNSHLDYPKDSDLV
EAFHCDKTQVNRYKLSLLKPSTKALALSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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