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Report for CCDS28727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28727.1 Public Mus musculus 17 Trim40 23 108 98 CCDS HistoryNCBI Gene:195359Re-query CCDS DB by CCDS ID:28727.1Re-query CCDS DB by GeneID:195359See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087158.10 ENSMUSP00000084400.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087158.10Link to Ensembl Protein Viewer:ENSMUSP00000084400.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087158Re-query CCDS DB by Protein ID:ENSMUSP00000084400
Original member Current member NCBI NM_001033235.3 NP_001028407.1 Accepted alive Link to Nucleotide Sequence:NM_001033235.3Link to Protein Sequence:NP_001028407.1Re-query CCDS DB by Nucleotide ID:NM_001033235Re-query CCDS DB by Protein ID:NP_001028407Link to BLAST:NP_001028407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028407.1 246 Q3UWA4 246 100% 0 0

Chromosomal Locations for CCDS 28727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36882396 36882462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36882642 36882664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36883149 36883364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36883966 36884061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36888846 36889184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGGCTCTCTTGACAAGGACAACCAGGACATTTGTCCTATCTGCCTGGATCCCCTGAAGGAGGCTGTGA
GCACCGACTGCAGACATCTCTTCTGCCGCATGTGCCTGACCCAGCACATGGATAAGGCTTCAGTCTCTGG
GATTCTCAGCTGCCCAGTCTGCAGGAAGCCATGTTCCGAGGGGGTCCTTGGAGACAATTACATCTGCCAC
ACCCACCAGAAGAGGGTGCGCAGGTTCTGTGAGGCTAGCGGACATCTCTTGTGTGAGGAATGCCTCCAAT
CCCCTGAACACCAGTCCCATACTGAACTCTCCATTGAAAATGCCATCAGCCACTACAAGGAAAGACTCAA
CCGGAGAAGCAGGAAGCTCAGAAAGGACCTTGGGAACCTTCAACAGCTGAAGGCTCAGGAAAAGAAGATG
CTGCAGGCTCTGCAGGTGGATTGTGAGTGTCACAGGCTAAGAACTGACCTGCAGAACCAAGACCAAACCA
AGGAACAACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGTGGCCAAGAT
CTTTAGCTTCTCTGAGGCAGTAACACAGCTCAGCATCCTGGTTTCTGGCCTGGAAAGGATGGCCAAGGAT
CTGGATGCCAGCACCCTGAAGGATGCCAGTGACTTACTGGACAGGAGCGCACCACAGAAATTAGAAGGAC
TTCTCTCTCGTGTTTCTCCAGCTGGTCCAAAGCTCAGTTAG

Translation (246 aa):
MGSLDKDNQDICPICLDPLKEAVSTDCRHLFCRMCLTQHMDKASVSGILSCPVCRKPCSEGVLGDNYICH
THQKRVRRFCEASGHLLCEECLQSPEHQSHTELSIENAISHYKERLNRRSRKLRKDLGNLQQLKAQEKKM
LQALQVDCECHRLRTDLQNQDQTKEQLKALPWHWLDQEDLPEEVAKIFSFSEAVTQLSILVSGLERMAKD
LDASTLKDASDLLDRSAPQKLEGLLSRVSPAGPKLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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