NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39234.1 Public Mus musculus 5 Pebp1 23 108 98 CCDS HistoryNCBI Gene:23980Re-query CCDS DB by CCDS ID:39234.1Re-query CCDS DB by GeneID:23980See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036951.12 ENSMUSP00000048425.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036951.12Link to Ensembl Protein Viewer:ENSMUSP00000048425.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036951Re-query CCDS DB by Protein ID:ENSMUSP00000048425
Original member Current member NCBI NM_018858.2 NP_061346.2 Accepted alive Link to Nucleotide Sequence:NM_018858.2Link to Protein Sequence:NP_061346.2Re-query CCDS DB by Nucleotide ID:NM_018858Re-query CCDS DB by Protein ID:NP_061346Link to BLAST:NP_061346.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061346.2 187 P70296 187 100% 0 0

Chromosomal Locations for CCDS 39234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 117283248 117283465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117285721 117285821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117286135 117286244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 117287409 117287543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGGCCGCCGACATCAGCCAGTGGGCCGGGCCCTTGTGCTTGCAGGAGGTGGACGAGCCGCCCCAGCACG
CCCTGCGGGTCGACTACGCCGGGGTGACGGTGGACGAGCTGGGCAAAGTGCTAACGCCCACCCAGGTTAT
GAACAGGCCCAGCAGCATTTCATGGGACGGCCTTGATCCTGGGAAACTCTACACCCTGGTCCTCACAGAC
CCCGATGCTCCCAGCAGGAAGGATCCCAAATTCAGGGAGTGGCACCACTTCCTGGTGGTCAACATGAAGG
GTAATGACATTAGCAGTGGCACTGTCCTCTCAGATTATGTGGGCTCCGGGCCTCCCAGTGGCACAGGTCT
CCACCGCTATGTCTGGCTGGTGTACGAGCAGGAACAGCCGCTGAGCTGCGACGAGCCCATTCTCAGCAAC
AAGTCTGGAGACAATCGCGGCAAGTTCAAGGTGGAGACCTTCCGCAAGAAGTATAACCTGGGAGCCCCGG
TGGCGGGCACGTGCTACCAAGCCGAGTGGGATGACTATGTGCCCAAGCTGTACGAGCAGCTGTCAGGGAA
GTAG

Translation (187 aa):
MAADISQWAGPLCLQEVDEPPQHALRVDYAGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTD
PDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSDYVGSGPPSGTGLHRYVWLVYEQEQPLSCDEPILSN
KSGDNRGKFKVETFRKKYNLGAPVAGTCYQAEWDDYVPKLYEQLSGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH