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Report for CCDS30292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30292.1 Public Mus musculus X Pgr15l 23 108 98 CCDS HistoryNCBI Gene:245526Re-query CCDS DB by CCDS ID:30292.1Re-query CCDS DB by GeneID:245526See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033556.3 ENSMUSP00000033556.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033556.3Link to Ensembl Protein Viewer:ENSMUSP00000033556.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000033556Re-query CCDS DB by Protein ID:ENSMUSP00000033556
Original member Current member NCBI NM_001033361.3 NP_001028533.1 Accepted alive Link to Nucleotide Sequence:NM_001033361.3Link to Protein Sequence:NP_001028533.1Re-query CCDS DB by Nucleotide ID:NM_001033361Re-query CCDS DB by Protein ID:NP_001028533Link to BLAST:NP_001028533.1

Chromosomal Locations for CCDS 30292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 97076014 97076403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 97076607 97076732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 97077116 97077249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 97077655 97078375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGAACACTTCCTTCAAGGGAGTGTCTCCTTTCCTGTCACAAATGGAAAGTGCCATTGATTGGCTCGGAG
AAAATATCAGTTGGGTTCCATCAATAGAGGATCAAAGCTGCAATCACACAACCCAGAATGGAACCAATAT
CTCCAGTGCAGAATGGGGAGGGCCAACAGGATCAGTCAGGAGATGGCTGGGGGGCAATCCCCACATCATG
GCAAAGATTGTGCTGACATTTGCATACGCTGTCATCATAGTGATATCTCTCTTTGGCAACTCCCTGGTAT
GCCAAGTTTTTGTCAAGCACAAGGAAATCAAGAAATCAACAGGCCTTCTCATCTTCAATCTGGCAATATC
TGACATTTTGATAATCCTGCTCAACAGTCCATTTGCTCTGGCTCGTTTTCTGAGTGGACAGTGGGTTTTC
GGTAGGATCATGTGCCATGTCAGTCGGTTTGCCCAGTACTGCTCCCTCCATGTTTCAACTCTTACACTGA
TGGCAGTTGCTATGGACCGGCACCGGGTAATTCTGCACCCAATGAAACCAAGGCTAACCCACTCCCAATG
CCTATTTGTTGTTGCCATGATCTGGAGTATTGCAGTGTTCCTTGCTCTGCCTCATGCGATTTACCAAAAT
CTGTTCACTCTCGTCAACATGGATGGTGATACCAGGAGCTACTGCCTCCCTTCTTTTCCTGGACCCAGCA
TACTGGTTTCAAAGTATGTGGACCTCGGGACATTTATCTTGTTGTATATCCTGCCACTTCTGGTGATTGT
TGTAACCTACTCTCACCTAGGAAAGAGGTTGTGGATTCAAAATGCTATTGGTGATGCATCTGCTCGTCAA
CTCATGGCACACTACCAGAAGCGCAAGAAGAGCATCCGGATGTTGATACTTATTGTATTGGTCTTTGCAG
TTTGTTGGTTTCCACTTAACTTCTATGTGGTTCTTATTTCCAGTGCAGGTGTAGAAAATGACAGTGTGCT
TTTCTATGCCTTTCACTGGTTTGCAATGAGCAGCACCTGCTACAATCCTTTCATATACTGTTGGCTCAAC
AGGAGCTTCCGTGCCAAACTAAGATCTATATCATCTTTCAGGATGCAATCACTGTTTGTGTGTAGTAACT
CCCAGGTTCAGCAAATAAAACCACAGGAGAGTCATGAGCTTAGGGAGCTCCAGACATCTTCACTGCTACG
AGTTCCCCTGGCTGTCCCAGAGCCCCAGGTTTTTGAAGATCCCAGTTTGGCTACAGGGGATAATTCCCAG
GTCTCTGTCCAAGGAGAATGGGAAGATCCAGATCCCACTCTAGATGAAGAACCAGGGCCTTCAACTCGGG
ATACTTACTTTTGTATCCACATGCAGACTAGCAGTCACTAA

Translation (456 aa):
MNTSFKGVSPFLSQMESAIDWLGENISWVPSIEDQSCNHTTQNGTNISSAEWGGPTGSVRRWLGGNPHIM
AKIVLTFAYAVIIVISLFGNSLVCQVFVKHKEIKKSTGLLIFNLAISDILIILLNSPFALARFLSGQWVF
GRIMCHVSRFAQYCSLHVSTLTLMAVAMDRHRVILHPMKPRLTHSQCLFVVAMIWSIAVFLALPHAIYQN
LFTLVNMDGDTRSYCLPSFPGPSILVSKYVDLGTFILLYILPLLVIVVTYSHLGKRLWIQNAIGDASARQ
LMAHYQKRKKSIRMLILIVLVFAVCWFPLNFYVVLISSAGVENDSVLFYAFHWFAMSSTCYNPFIYCWLN
RSFRAKLRSISSFRMQSLFVCSNSQVQQIKPQESHELRELQTSSLLRVPLAVPEPQVFEDPSLATGDNSQ
VSVQGEWEDPDPTLDEEPGPSTRDTYFCIHMQTSSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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