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Report for CCDS5025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5025.1 Public Homo sapiens 6 GJA10 24 110 108 CCDS HistoryNCBI Gene:84694Re-query CCDS DB by CCDS ID:5025.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5025.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369352.1 ENSP00000358358.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369352.1Link to Ensembl Protein Viewer:ENSP00000358358.1Re-query CCDS DB by Nucleotide ID:ENST00000369352Re-query CCDS DB by Protein ID:ENSP00000358358
Original member Current member NCBI NM_032602.2 NP_115991.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032602.2Link to Protein Sequence:NP_115991.1Re-query CCDS DB by Nucleotide ID:NM_032602Re-query CCDS DB by Protein ID:NP_115991Link to BLAST:NP_115991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115991.1 543 Q969M2 543 100% 0 0

Chromosomal Locations for CCDS 5025.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89894469 89896100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGGGGGACTGGAACTTATTGGGTGGCATCCTAGAGGAAGTTCACTCCCACTCAACCATAGTGGGGAAAA
TCTGGCTGACCATCCTCTTCATCTTCCGAATGCTGGTACTTCGTGTGGCTGCTGAGGATGTCTGGGATGA
TGAACAGTCAGCATTTGCCTGCAACACCCGGCAGCCAGGTTGCAACAATATCTGTTATGATGATGCATTC
CCTATCTCTTTGATCAGGTTCTGGGTTTTACAGATCATCTTTGTGTCTTCTCCTTCTTTGGTCTATATGG
GCCATGCACTTTATAGGCTCAGGGCCTTTGAGAAAGACAGGCAGAGGAAAAAGTCACACCTTAGAGCCCA
GATGGAGAATCCAGATCTTGACTTGGAGGAGCAGCAAAGAATAGATAGGGAACTGAGGAGGTTAGAGGAG
CAGAAGAGGATCCATAAAGTCCCTCTGAAAGGATGTCTGCTGCGTACTTATGTCTTACACATCTTGACCA
GATCTGTGCTGGAAGTAGGATTCATGATAGGCCAATATATTCTCTATGGGTTTCAAATGCACCCCCTTTA
CAAATGCACTCAACCTCCTTGCCCCAATGCGGTGGATTGCTTTGTATCCAGGCCCACTGAGAAGACAATT
TTCATGCTTTTTATGCACAGCATTGCAGCCATTTCCTTGTTACTCAATATACTGGAAATATTTCATCTAG
GCATCAGAAAAATTATGAGGACACTTTATAAGAAATCCAGCAGTGAGGGCATTGAGGATGAAACAGGCCC
TCCATTCCATTTGAAGAAATATTCTGTGGCCCAGCAGTGTATGATTTGCTCTTCATTGCCTGAAAGAATC
TCTCCACTTCAAGCTAACAATCAACAGCAAGTCATTCGAGTTAATGTGCCAAAGTCTAAAACCATGTGGC
AAATCCCACAGCCAAGGCAACTTGAAGTAGACCCTTCCAATGGGAAAAAGGACTGGTCTGAGAAGGATCA
GCATAGCGGACAGCTCCATGTTCACAGCCCGTGTCCCTGGGCTGGCAGTGCTGGAAATCAGCACCTGGGA
CAGCAATCAGACCATTCCTCATTTGGCCTGCAGAATACAATGTCTCAGTCCTGGCTAGGTACAACTACGG
CTCCTAGAAACTGTCCATCCTTTGCAGTAGGAACCTGGGAGCAGTCCCAGGACCCAGAACCCTCAGGTGA
GCCTCTCACAGATCTTCATAGTCACTGCAGAGACAGTGAAGGCAGCATGAGAGAGAGTGGGGTCTGGATA
GACAGATCTCGCCCAGGCAGTCGCAAGGCCAGCTTTCTGTCCAGATTGTTGTCTGAAAAGCGACATCTGC
ACAGTGACTCAGGAAGCTCTGGTTCTCGGAATAGCTCCTGCTTGGATTTTCCTCACTGGGAAAACAGCCC
CTCACCTCTGCCTTCAGTCACTGGGCACAGAACATCAATGGTAAGACAGGCAGCCCTACCGATCATGGAA
CTATCACAAGAGCTGTTCCATTCTGGATGCTTTCTTTTTCCTTTCTTTCTTCCTGGGGTGTGTATGTATG
TTTGTGTTGACAGAGAGGCAGATGGAGGGGGAGATTATTTATGGAGAGATAAAATTATTCATTCGATACA
TTCAGTTAAATTCAATTCATAA

Translation (543 aa):
MGDWNLLGGILEEVHSHSTIVGKIWLTILFIFRMLVLRVAAEDVWDDEQSAFACNTRQPGCNNICYDDAF
PISLIRFWVLQIIFVSSPSLVYMGHALYRLRAFEKDRQRKKSHLRAQMENPDLDLEEQQRIDRELRRLEE
QKRIHKVPLKGCLLRTYVLHILTRSVLEVGFMIGQYILYGFQMHPLYKCTQPPCPNAVDCFVSRPTEKTI
FMLFMHSIAAISLLLNILEIFHLGIRKIMRTLYKKSSSEGIEDETGPPFHLKKYSVAQQCMICSSLPERI
SPLQANNQQQVIRVNVPKSKTMWQIPQPRQLEVDPSNGKKDWSEKDQHSGQLHVHSPCPWAGSAGNQHLG
QQSDHSSFGLQNTMSQSWLGTTTAPRNCPSFAVGTWEQSQDPEPSGEPLTDLHSHCRDSEGSMRESGVWI
DRSRPGSRKASFLSRLLSEKRHLHSDSGSSGSRNSSCLDFPHWENSPSPLPSVTGHRTSMVRQAALPIME
LSQELFHSGCFLFPFFLPGVCMYVCVDREADGGGDYLWRDKIIHSIHSVKFNS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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