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Report for CCDS273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
273.1 Public Homo sapiens 1 TRIM63 24 110 108 CCDS HistoryNCBI Gene:84676Re-query CCDS DB by CCDS ID:273.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 273.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374272.4 ENSP00000363390.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374272.4Link to Ensembl Protein Viewer:ENSP00000363390.3Re-query CCDS DB by Nucleotide ID:ENST00000374272Re-query CCDS DB by Protein ID:ENSP00000363390
Original member Current member NCBI NM_032588.4 NP_115977.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032588.4Link to Protein Sequence:NP_115977.2Re-query CCDS DB by Nucleotide ID:NM_032588Re-query CCDS DB by Protein ID:NP_115977Link to BLAST:NP_115977.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115977.2 353 Q969Q1-1 353 100% 0 0

Chromosomal Locations for CCDS 273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26051873 26051883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26053893 26053964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26057203 26057327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26057628 26057650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26058390 26058623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26060266 26060361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26061166 26061334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26066268 26066440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26067336 26067494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGATTATAAGTCGAGCCTGATCCAGGATGGGAATCCCATGGAGAACTTGGAGAAGCAGCTGATCTGCC
CTATCTGCCTGGAGATGTTTACCAAGCCAGTGGTCATCTTGCCGTGCCAGCACAACCTGTGCCGGAAGTG
TGCCAATGACATCTTCCAGGCTGCAAATCCCTACTGGACCAGCCGGGGCAGCTCAGTGTCCATGTCTGGA
GGCCGTTTCCGCTGCCCCACCTGCCGCCACGAGGTGATCATGGATCGTCACGGAGTGTACGGCCTGCAGA
GGAACCTGCTGGTGGAGAACATCATCGACATCTACAAACAGGAGTGCTCCAGTCGGCCGCTGCAGAAGGG
CAGTCACCCCATGTGCAAGGAGCACGAAGATGAGAAAATCAACATCTACTGTCTCACGTGTGAGGTGCCC
ACCTGCTCCATGTGCAAGGTGTTTGGGATCCACAAGGCCTGCGAGGTGGCCCCATTGCAGAGTGTCTTCC
AGGGACAAAAGACTGAACTGAATAACTGTATCTCCATGCTGGTGGCGGGGAATGACCGTGTGCAGACCAT
CATCACTCAGCTGGAGGATTCCCGTCGAGTGACCAAGGAGAACAGTCACCAGGTAAAGGAAGAGCTGAGC
CAGAAGTTTGACACGTTGTATGCCATCCTGGATGAGAAGAAAAGTGAGTTGCTGCAGCGGATCACGCAGG
AGCAGGAGAAAAAGCTTAGCTTCATCGAGGCCCTCATCCAGCAGTACCAGGAGCAGCTGGACAAGTCCAC
AAAGCTGGTGGAAACTGCCATCCAGTCCCTGGACGAGCCTGGGGGAGCCACCTTCCTCTTGACTGCCAAG
CAACTCATCAAAAGCATTGTGGAAGCTTCCAAGGGCTGCCAGCTGGGGAAGACAGAGCAGGGCTTTGAGA
ACATGGACTTCTTTACTTTGGATTTAGAGCACATAGCAGACGCCCTGAGAGCCATTGACTTTGGGACAGA
TGAGGAAGAGGAAGAATTCATTGAAGAAGAAGATCAGGAAGAGGAAGAGTCCACAGAAGGGAAGGAAGAA
GGACACCAGTAA

Translation (353 aa):
MDYKSSLIQDGNPMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTSRGSSVSMSG
GRFRCPTCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYCLTCEVP
TCSMCKVFGIHKACEVAPLQSVFQGQKTELNNCISMLVAGNDRVQTIITQLEDSRRVTKENSHQVKEELS
QKFDTLYAILDEKKSELLQRITQEQEKKLSFIEALIQQYQEQLDKSTKLVETAIQSLDEPGGATFLLTAK
QLIKSIVEASKGCQLGKTEQGFENMDFFTLDLEHIADALRAIDFGTDEEEEEFIEEEDQEEEESTEGKEE
GHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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