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Report for CCDS3935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3935.1 Public Homo sapiens 5 CARD6 24 110 108 CCDS HistoryNCBI Gene:84674Re-query CCDS DB by CCDS ID:3935.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254691.10 ENSP00000254691.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254691.10Link to Ensembl Protein Viewer:ENSP00000254691.5Re-query CCDS DB by Nucleotide ID:ENST00000254691Re-query CCDS DB by Protein ID:ENSP00000254691
Original member Current member NCBI NM_032587.4 NP_115976.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032587.4Link to Protein Sequence:NP_115976.2Re-query CCDS DB by Nucleotide ID:NM_032587Re-query CCDS DB by Protein ID:NP_115976Link to BLAST:NP_115976.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115976.2 1037 Q9BX69 1037 100% 0 0

Chromosomal Locations for CCDS 3935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 40841383 40841665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 40843152 40843709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 40852174 40854446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3114 nt):
ATGGCTACCGAGAGTACTCCCTCAGAGATCATAGAAAGAGAAAGAAAAAAGTTGCTTGAAATCCTTCAAC
ATGATCCTGATTCTATCTTAGACACGTTAACTTCTCGGAGGCTGATTTCTGAGGAAGAGTATGAGACTCT
GGAGAATGTTACAGATCTCCTGAAGAAAAGTCGGAAGCTGTTAATTTTGGTACAGAAAAAGGGAGAGGCG
ACCTGTCAGCATTTTCTCAAGTGTTTATTTAGTACTTTTCCACAGTCAGCTGCCATTTGCGGCTTAAGGC
ATGAAGTTTTAAAACATGAGAATACAGTACCTCCTCAATCTATGGGGGCAAGCAGTAATTCAGAAGATGC
TTTTTCTCCTGGAATAAAACAGCCTGAAGCCCCTGAGATCACAGTGTTCTTCAGTGAGAAGGAACACTTG
GATTTGGAAACCTCTGAGTTTTTCAGGGACAAGAAAACTAGTTATAGGGAAACAGCTTTGTCTGCCAGGA
AGAATGAGAAGGAATATGACACACCAGAAGTCACATTATCATATTCAGTTGAGAAAGTTGGATGTGAAGT
TCCAGCAACTATTACATATATAAAAGATGGACAGAGATATGAGGAGCTAGATGATTCTTTATACTTAGGA
AAAGAGGAATATCTAGGATCTGTTGACACCCCTGAAGATGCAGAAGCCACTGTGGAAGAGGAGGTTTATG
ATGACCCAGAGCACGTTGGATATGATGGTGAAGAGGACTTCGAGAATTCAGAAACCACAGAGTTCTCTGG
TGAAGAACCAAGTTATGAGGGATCAGAAACCAGCCTTTCATTGGAGGAGGAACAGGAGAAAAGTATAGAA
GAAAGAAAAAAGGTGTTTAAAGATGTCCTGTTATGTTTGAACATGGATAGAAGCAGAAAGGTTCTGCCAG
ATTTTGTTAAACAATTCTCCTTAGATCGAGGATGTAAGTGGACCCCTGAGAGTCCAGGAGACTTAGCCTG
GAATTTCCTGATGAAAGTTCAAGCACGAGATGTGACGGCTAGGGATTCAATCCTCAGTCACAAGGTTCTG
GATGAAGATAGCAAGGAGGATTTGCTGGCTGGAGTGGAGAATTTGGAAATTCGAGACATACAAACCATTA
ATCCCCTTGACGTGCTTTGTGCCACCATGCTGTGTTCAGATAGCTCTTTGCAACGCCAAGTCATGTCAAA
CATGTATCAGTGCCAGTTTGCTCTTCCCCTGCTACTGCCAGATGCAGAAAACAACAAAAGCATCTTAATG
CTGGGGGCCATGAAAGACATTGTGAAGAAGCAGTCAACACAGTTTTCAGGGGGGCCTACAGAGGATACAG
AAAAGTTTCTGACTCTCATGAAGATGCCTGTCATCTCTTTTGTGCGTCTAGGATACTGTAGCTTCTCTAA
GTCCAGAATCCTCAACACACTTCTCAGCCCTGCCCAGTTGAAATTACACAAAATCTTTCTTCATCAAGAT
TTGCCTCTTTTGGTGCTTCCCCGGCAAATCTCTGATGGCCTGGTTGAGATAACATGGTGTTTTCCTGATA
GCGATGATAGAAAGGAAAACCCCTTTTTCCAAAAGCCTGTTGCTCTGGCTAATCTCCGTGGAAATCTAGA
AAGCTTTTGGACTCAGTTTGGTTTTTTGATGGAAGTTTCTTCAGCTGTGTTTTTTTTCACTGACTGTTTA
GGTGAGAAGGAATGGGACTTGCTAATGTTTTTAGGAGAGGCTGCCATTGAAAGATGCTACTTTGTTCTCA
GTTCCCAAGCCAGGGAGAGTGAAGAGGCTCAAATTTTTCAGAGGATACTGAACTTGAAGCCAGCACAGCT
ACTGTTTTGGGAGAGGGGAGATGCTGGGGATAGAAGGAAGAACATGGAGGGCCTTCAAGCTGCCCTCCAG
GAAGTGATGTTCTCTTCTTGCCTCAGATGTGTGTCTGTGGAGGATATGGCCGCCCTGGCCAGGGAGCTGG
GGATTCAGGTAGATGAAGACTTTGAAAACACTCAGAGAATTCAAGTTTCCTCTGGAGAAAACATGGCTGG
GACAGCTGAAGGTGAGGGTCAGCAAAGACACAGTCAGCTAAAAAGCTCATCTAAAAGCCAGGCTCTAATG
CCAATTCAAGAGCCTGGGACTCAATGTGAGCTCAGCCAGAATCTTCAGAATCTCTATGGTACCCCAGTAT
TCAGGCCTGTTCTAGAGAACTCCTGGCTCTTTCCAACCAGAATTGGAGGTAACTTTAACCATGTTTCCTT
GAAAGCCTCCTGGGTTATGGGCCGCCCCTTTGGGTCAGAGCAGAGGCCTAAGTGGTTCCATCCTTTGCCT
TTTCAGAATGCAGGGGCCCAGGGCCGAGGTAAAAGTTTTGGTATTCAATCCTTCCATCCCCAGATATTTT
ATTCAGGTGAAAGATTCATGAAATTTTCCAGAGTTGCTCGGGGATGTCACTCGAATGGAACATTTGGGAG
ACTGCCAAGACCCATTTGTCAGCATGTACAGGCCTGCCCTGAGAGACCACAAATGATGGGAACTCTTGAA
AGGTCTAGGGCAGTAGCCTCCAAGATAGGTCACTCCTATTCCCTGGATTCACAGCCAGCAAGAGCAGTAG
GGAAGCCATGGCCTCAGCAAGCTTGCACCAGGGTAACAGAGTTAACTGAAGCAACTGGAAAACTGATAAG
AACATCCCATATTGGAAAGCCTCACCCTCAGTCCTTTCAACCAGCAGCAGCCACACAAAAACTAAGACCT
GCTTCTCAGCAAGGAGTCCAGATGAAGACACAAGGTGGGGCTTCAAATCCAGCTCTCCAAATAGGGTCCC
ATCCCATGTGCAAGAGCTCTCAGTTCAAATCCGATCAGTCCAACCCATCCACAGTCAAACACTCCCAGCC
TAAACCCTTCCATTCTGTGCCCTCTCAACCTAAATCCTCTCAGACAAAATCCTGTCAGTCCCAGCCCTCC
CAAACTAAACCTTCTCCATGCAAATCTACTCAGCCTAAGCCAAGCCAGCCCTGGCCTCCCCAGTCTAAGC
CTTCTCAGCCCAGACCCCCTCAACCTAAGTCATCCTCAACCAATCCTTCACAAGCTAAGGCACACCACTC
AAAAGCAGGGCAGAAGAGGGGAGGGAAGCATTAA

Translation (1037 aa):
MATESTPSEIIERERKKLLEILQHDPDSILDTLTSRRLISEEEYETLENVTDLLKKSRKLLILVQKKGEA
TCQHFLKCLFSTFPQSAAICGLRHEVLKHENTVPPQSMGASSNSEDAFSPGIKQPEAPEITVFFSEKEHL
DLETSEFFRDKKTSYRETALSARKNEKEYDTPEVTLSYSVEKVGCEVPATITYIKDGQRYEELDDSLYLG
KEEYLGSVDTPEDAEATVEEEVYDDPEHVGYDGEEDFENSETTEFSGEEPSYEGSETSLSLEEEQEKSIE
ERKKVFKDVLLCLNMDRSRKVLPDFVKQFSLDRGCKWTPESPGDLAWNFLMKVQARDVTARDSILSHKVL
DEDSKEDLLAGVENLEIRDIQTINPLDVLCATMLCSDSSLQRQVMSNMYQCQFALPLLLPDAENNKSILM
LGAMKDIVKKQSTQFSGGPTEDTEKFLTLMKMPVISFVRLGYCSFSKSRILNTLLSPAQLKLHKIFLHQD
LPLLVLPRQISDGLVEITWCFPDSDDRKENPFFQKPVALANLRGNLESFWTQFGFLMEVSSAVFFFTDCL
GEKEWDLLMFLGEAAIERCYFVLSSQARESEEAQIFQRILNLKPAQLLFWERGDAGDRRKNMEGLQAALQ
EVMFSSCLRCVSVEDMAALARELGIQVDEDFENTQRIQVSSGENMAGTAEGEGQQRHSQLKSSSKSQALM
PIQEPGTQCELSQNLQNLYGTPVFRPVLENSWLFPTRIGGNFNHVSLKASWVMGRPFGSEQRPKWFHPLP
FQNAGAQGRGKSFGIQSFHPQIFYSGERFMKFSRVARGCHSNGTFGRLPRPICQHVQACPERPQMMGTLE
RSRAVASKIGHSYSLDSQPARAVGKPWPQQACTRVTELTEATGKLIRTSHIGKPHPQSFQPAAATQKLRP
ASQQGVQMKTQGGASNPALQIGSHPMCKSSQFKSDQSNPSTVKHSQPKPFHSVPSQPKSSQTKSCQSQPS
QTKPSPCKSTQPKPSQPWPPQSKPSQPRPPQPKSSSTNPSQAKAHHSKAGQKRGGKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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