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Report for CCDS18782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18782.1 Public Mus musculus 4 Runx3 23 108 98 CCDS HistoryNCBI Gene:12399Re-query CCDS DB by CCDS ID:18782.1Re-query CCDS DB by GeneID:12399See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056977.13 ENSMUSP00000050353.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056977.13Link to Ensembl Protein Viewer:ENSMUSP00000050353.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056977Re-query CCDS DB by Protein ID:ENSMUSP00000050353
Original member Current member NCBI NM_019732.2 NP_062706.2 Accepted alive Link to Nucleotide Sequence:NM_019732.2Link to Protein Sequence:NP_062706.2Re-query CCDS DB by Nucleotide ID:NM_019732Re-query CCDS DB by Protein ID:NP_062706Link to BLAST:NP_062706.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062706.2 423 Q64131-2 423 98.1087% 0 8

Chromosomal Locations for CCDS 18782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135121106 135121163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135152788 135153056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135155282 135155438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135163231 135163335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135171109 135171258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135175300 135175832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCTTCCAACAGCATCTTTGACTCCTTCCCCAACTATACACCAACCTTCATACGAGACCCGAGCACCA
GCCGCCGCTTCACTCCCCCCTCCACGGCCTTCCCCTGCGGCGGCGGCGGCGGCGGCAAGATGGGCGAGAA
CAGCGGCGCGCTAAGCGCGCAGGCAACCGCGGGCCCCGGCGGCCGCACCCGGCCCGAAGTGCGCTCGATG
GTGGACGTGCTGGCCGACCACGCGGGAGAGCTCGTGCGCACCGACAGCCCCAACTTCCTCTGCTCCGTGC
TGCCCTCGCACTGGCGCTGCAACAAGACGCTGCCGGTCGCCTTCAAGGTGGTGGCCCTGGGGGATGTGCC
GGATGGAACGGTGGTGACCGTGATGGCCGGCAATGATGAGAACTACTCCGCCGAGCTGCGCAACGCTTCC
GCTGTCATGAAGAACCAAGTGGCCAGGTTCAACGACCTTCGATTCGTGGGCCGCAGTGGGCGAGGGAAGA
GTTTCACGCTCACAATCACCGTGTTCACCAACCCTACCCAAGTGGCTACCTACCACCGAGCCATCAAGGT
CACTGTGGATGGACCCCGGGAACCCCGACGGCACCGGCAGAAGATAGAAGACCAGACCAAGGCCTTCCCC
GACCGCTTTGGAGACCTGCGCATGCGTGTAACACCAAGCACACCCAGCCCCCGTGGCTCTCTCAGCACCA
CGAGCCACTTCAGCAGCCAGGCCCAGACCCCAATCCAAGGCTCCTCAGACCTGAACCCCTTCTCCGACCC
CCGCCAGTTTGACCGCTCCTTCCCTACGCTGCAGAGCCTCACAGAGAGCCGCTTCCCGGACCCCAGGATG
CACTACCCGGGAGCCATGTCTGCCGCCTTCCCCTACAGCGCCACACCATCGGGCACCAGCCTGGGCAGCC
TGAGCGTGGCGGGCATGCCGGCCAGCAGCCGCTTCCACCACACCTACCTCCCTCCGCCCTACCCCGGGGC
CCCACAGAGCCAGAGCGGGCCCTTTCAGGCCAACCCCGCGCCCTACCACCTCTTTTACGGCGCCTCCTCC
GGCTCCTACCAGTTCTCCATGGCAGCCGCGGGAGGTGGTGAGCGCTCGCCCACCCGCATGCTGACCTCCT
GCCCCAGCGGCGCTTCGGTGTCAGCAGGCAACCTCATGAACCCCAGCCTGGGCCAGGCTGATGGCGTGGA
AGCCGACGGCAGCCACAGCAACTCGCCCACGGCCCTGAGCACGCCGGGCCGCATGGACGAGGCCGTGTGG
CGGCCCTACTAA

Translation (423 aa):
MASNSIFDSFPNYTPTFIRDPSTSRRFTPPSTAFPCGGGGGGKMGENSGALSAQATAGPGGRTRPEVRSM
VDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNAS
AVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPRRHRQKIEDQTKAFP
DRFGDLRMRVTPSTPSPRGSLSTTSHFSSQAQTPIQGSSDLNPFSDPRQFDRSFPTLQSLTESRFPDPRM
HYPGAMSAAFPYSATPSGTSLGSLSVAGMPASSRFHHTYLPPPYPGAPQSQSGPFQANPAPYHLFYGASS
GSYQFSMAAAGGGERSPTRMLTSCPSGASVSAGNLMNPSLGQADGVEADGSHSNSPTALSTPGRMDEAVW
RPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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