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Report for CCDS8892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8892.1 Public Homo sapiens 12 SARNP 24 110 108 CCDS HistoryNCBI Gene:84324Re-query CCDS DB by CCDS ID:8892.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336133.8 ENSP00000337632.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336133.8Link to Ensembl Protein Viewer:ENSP00000337632.3Re-query CCDS DB by Nucleotide ID:ENST00000336133Re-query CCDS DB by Protein ID:ENSP00000337632
Original member Current member EBI ENST00000546604.5 ENSP00000449409.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546604.5Link to Ensembl Protein Viewer:ENSP00000449409.1Re-query CCDS DB by Nucleotide ID:ENST00000546604Re-query CCDS DB by Protein ID:ENSP00000449409
Original member Current member NCBI NM_033082.4 NP_149073.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033082.4Link to Protein Sequence:NP_149073.1Re-query CCDS DB by Nucleotide ID:NM_033082Re-query CCDS DB by Protein ID:NP_149073Link to BLAST:NP_149073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149073.1 210 P82979 210 100% 0 0

Chromosomal Locations for CCDS 8892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55757512 55757553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55760551 55760640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55789075 55789143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55790567 55790592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55794359 55794387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55794807 55794880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55796025 55796076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55800562 55800629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55800854 55800900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55803629 55803728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55817666 55817701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGCGACCGAGACGGTGGAGCTCCATAAGCTAAAGCTTGCCGAACTAAAGCAAGAATGTCTTGCTCGTG
GTTTGGAGACCAAGGGAATAAAGCAAGATCTTATCCACAGACTCCAGGCATATCTTGAAGAACATGCTGA
AGAGGAGGCAAATGAAGAAGATGTACTGGGAGATGAAACAGAGGAAGAAGAAACAAAGCCCATTGAGCTC
CCTGTCAAAGAGGAAGAACCCCCTGAAAAAACTGTTGATGTGGCAGCAGAGAAGAAAGTGGTGAAAATTA
CATCTGAAATACCACAGACTGAGAGAATGCAGAAGAGGGCTGAACGATTCAATGTACCTGTGAGCTTGGA
GAGTAAGAAAGCTGCTCGGGCAGCTAGGTTTGGGATTTCTTCAGTTCCAACAAAAGGTCTGTCATCTGAT
AACAAACCTATGGTTAACTTGGATAAGCTGAAGGAAAGAGCTCAAAGATTTGGTTTGAATGTCTCTTCAA
TCTCCAGAAAGTCTGAAGATGATGAGAAACTGAAAAAGAGGAAGGAGCGATTTGGGATTGTCACAAGTTC
AGCTGGAACTGGAACCACAGAGGATACAGAGGCAAAGAAGAGGAAAAGAGCAGAGCGCTTTGGGATTGCC
TGA

Translation (210 aa):
MATETVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAEEEANEEDVLGDETEEEETKPIEL
PVKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPTKGLSSD
NKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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