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Report for CCDS12438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12438.1 Public Homo sapiens 19 PDCD2L 24 110 108 CCDS HistoryNCBI Gene:84306Re-query CCDS DB by CCDS ID:12438.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246535.4 ENSP00000246535.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246535.4Link to Ensembl Protein Viewer:ENSP00000246535.1Re-query CCDS DB by Nucleotide ID:ENST00000246535Re-query CCDS DB by Protein ID:ENSP00000246535
Original member Current member NCBI NM_032346.2 NP_115722.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032346.2Link to Protein Sequence:NP_115722.1Re-query CCDS DB by Nucleotide ID:NM_032346Re-query CCDS DB by Protein ID:NP_115722Link to BLAST:NP_115722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115722.1 358 Q9BRP1 358 100% 0 0

Chromosomal Locations for CCDS 12438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34404431 34404538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34404649 34404815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34404930 34404990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34409161 34409510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34413737 34413847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34421519 34421667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34425990 34426120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCGGCCGTTCTGAAGCCGGTGCTGCTGGGCCTTCGAGATGCGCCGGTGCACGGCAGCCCCACAGGGC
CGGGTGCCTGGACTGCTAGCAAGCTGGGCGGCATTCCGGATGCTCTGCCCACCGTGGCTGCGCCCAGGCC
CGTGTGTCAGCGCTGCGGGCAGCCGCTCGCTCTGGTCGTGCAGGTGTATTGCCCGCTGGAAGGCTCCCCG
TTTCACCGTCTGCTGCACGTGTTCGCGTGCGCCTGCCCCGGCTGTAGCACCGGCGGTGCGCGCAGCTGGA
AGGTGTTCCGCTCCCAGTGCCTGCAGGTGCCAGAGAGAGAGGCGCAGGACGCTCAGAAACAGGGAAACAG
CCTTGCAGCTGAGGACTGGTGTGAAGGTGCTGATGACTGGGGAAGTGATACTGAGGAGGGGCCTTCACCA
CAGTTTACCTTGGATTTTGGGAATGATGCCAGCAGTGCCAAAGACGTAGACTGGACTGCTCGGCTCCAAG
ACCTCCGCCTGCAGGATGCTGTCCTGGGTGCTGCCCATCCTGTGCCTCCTGGGCTGCCGCTCTTCCTGCC
CTACTACATCTGTGTTGCAGATGAGGATGATTACAGGGACTTTGTCAACCTGGATCATGCCCACAGCCTT
CTGAGGGACTATCAGCAGAGAGAAGGCATTGCCATGGATCAGTTGCTTTCCCAAAGCCTTCCTAATGATG
GTGATGAAAAATATGAGAAGACCATAATTAAAAGTGGAGATCAGACGTTTTACAAATTCATGAAGCGAAT
TGCTGCTTGTCAGGAGCAGATTTTGAGGTATTCCTGGAGTGGAGAGCCACTCTTTTTGACCTGCCCTACA
TCAGAAGTCACCGAGCTCCCAGCCTGCAGCCAGTGTGGAGGCCAAAGGATATTTGAGTTTCAGCTTATGC
CAGCACTGGTCAGCATGCTCAAGAGTGCTAATTTAGGTCTTTCTGTGGAATTTGGAACAATTCTAGTTTA
CACATGTGAGAAGAGTTGCTGGCCCCCAAATCATCAGACTCCCATGGAAGAATTTTGTATTATACAAGAA
GACCCAGATGAATTATTGTTTAAGTAG

Translation (358 aa):
MAAVLKPVLLGLRDAPVHGSPTGPGAWTASKLGGIPDALPTVAAPRPVCQRCGQPLALVVQVYCPLEGSP
FHRLLHVFACACPGCSTGGARSWKVFRSQCLQVPEREAQDAQKQGNSLAAEDWCEGADDWGSDTEEGPSP
QFTLDFGNDASSAKDVDWTARLQDLRLQDAVLGAAHPVPPGLPLFLPYYICVADEDDYRDFVNLDHAHSL
LRDYQQREGIAMDQLLSQSLPNDGDEKYEKTIIKSGDQTFYKFMKRIAACQEQILRYSWSGEPLFLTCPT
SEVTELPACSQCGGQRIFEFQLMPALVSMLKSANLGLSVEFGTILVYTCEKSCWPPNHQTPMEEFCIIQE
DPDELLFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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