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Report for CCDS47535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47535.1 Public Homo sapiens 7 USP42 24 110 108 CCDS HistoryNCBI Gene:84132Re-query CCDS DB by CCDS ID:47535.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47535.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306177.10 ENSP00000301962.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306177.10Link to Ensembl Protein Viewer:ENSP00000301962.5Re-query CCDS DB by Nucleotide ID:ENST00000306177Re-query CCDS DB by Protein ID:ENSP00000301962
Original member Current member NCBI NM_032172.3 NP_115548.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032172.3Link to Protein Sequence:NP_115548.1Re-query CCDS DB by Nucleotide ID:NM_032172Re-query CCDS DB by Protein ID:NP_115548Link to BLAST:NP_115548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115548.1 1316 Q9H9J4-2 1316 100% 0 0

Chromosomal Locations for CCDS 47535.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6111134 6111374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6115323 6115523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6135841 6135951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6139092 6139194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6140128 6140195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6140914 6140984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6142932 6143014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6144085 6144196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6145516 6145656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6146148 6146248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6147739 6147892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6149583 6150302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6150412 6150506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6153756 6155195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6156754 6157055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6159450 6159457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3951 nt):
ATGACCATAGTTGACAAAGCTTCTGAATCTTCAGACCCATCAGCCTATCAGAATCAGCCTGGCAGCTCCG
AGGCAGTCTCACCTGGAGACATGGATGCAGGTTCTGCCAGCTGGGGTGCTGTGTCTTCATTGAATGATGT
GTCAAATCACACACTTTCTTTAGGACCAGTACCTGGTGCTGTAGTTTATTCGAGTTCATCTGTACCTGAT
AAATCAAAACCATCACCACAAAAGGATCAAGCCCTAGGTGATGGCATCGCTCCTCCACAGAAAGTTCTTT
TCCCATCTGAGAAGATTTGTCTTAAGTGGCAACAAACTCATAGAGTTGGAGCTGGGCTCCAGAATTTGGG
CAATACCTGTTTTGCCAATGCAGCACTGCAGTGTTTAACCTACACACCACCTCTTGCCAATTACATGCTA
TCACATGAACACTCCAAAACATGTCATGCAGAAGGCTTTTGTATGATGTGTACAATGCAAGCACATATTA
CCCAGGCACTCAGTAATCCTGGGGACGTTATTAAACCAATGTTTGTCATCAATGAGATGCGGCGTATAGC
TAGGCACTTCCGTTTTGGAAACCAAGAAGATGCCCATGAATTCCTTCAATACACTGTTGATGCTATGCAG
AAAGCATGCTTGAATGGCAGCAATAAATTAGACAGACACACCCAGGCCACCACTCTTGTTTGTCAGATAT
TTGGAGGATACCTAAGATCTAGAGTCAAATGTTTAAATTGCAAGGGCGTTTCAGATACTTTTGATCCATA
TCTTGATATAACATTGGAGATAAAGGCTGCTCAGAGTGTCAACAAGGCATTGGAGCAGTTTGTGAAGCCG
GAACAGCTTGATGGAGAAAACTCGTACAAGTGCAGCAAGTGTAAAAAGATGGTTCCAGCTTCAAAGAGGT
TCACTATCCATAGATCCTCTAATGTTCTTACACTTTCTCTGAAACGTTTTGCAAATTTTACCGGTGGAAA
AATTGCTAAGGATGTGAAATACCCTGAGTATCTTGATATTCGGCCATATATGTCTCAACCCAACGGAGAG
CCAATTGTCTACGTCTTGTATGCAGTGCTGGTCCACACTGGTTTTAATTGCCATGCTGGCCATTACTTCT
GCTACATAAAAGCTAGCAATGGCCTCTGGTATCAAATGAATGACTCCATTGTATCTACCAGTGATATTAG
ATCGGTACTCAGCCAACAAGCCTATGTGCTCTTTTATATCAGGTCCCATGATGTGAAAAATGGAGGTGAA
CTTACTCATCCCACCCATAGCCCCGGCCAGTCCTCTCCCCGCCCCGTCATCAGTCAGCGGGTTGTCACCA
ACAAACAGGCTGCGCCAGGCTTTATCGGACCACAGCTTCCCTCTCACATGATAAAGAATCCACCTCACTT
AAATGGGACTGGACCATTGAAAGACACGCCAAGCAGTTCCATGTCGAGTCCTAACGGGAATTCCAGTGTC
AACAGGGCTAGTCCTGTTAATGCTTCAGCTTCTGTCCAAAACTGGTCAGTTAATAGGTCCTCAGTGATCC
CAGAACATCCTAAGAAACAAAAAATTACAATCAGTATTCACAACAAGTTGCCTGTTCGCCAGTGTCAGTC
TCAACCTAACCTTCATAGTAATTCTTTGGAGAACCCTACCAAGCCCGTTCCCTCTTCTACCATTACCAAT
TCTGCAGTACAGTCTACCTCGAACGCATCTACGATGTCAGTTTCTAGTAAAGTAACAAAACCGATCCCCC
GCAGTGAATCCTGCTCCCAGCCCGTGATGAATGGCAAATCCAAGCTGAACTCCAGCGTGCTGGTGCCCTA
TGGCGCCGAGTCCTCTGAGGACTCTGACGAGGAGTCAAAGGGGCTGGGCAAGGAGAATGGGATTGGTACG
ATTGTGAGCTCCCACTCTCCCGGCCAAGATGCCGAAGATGAGGAGGCCACTCCGCACGAGCTTCAAGAAC
CCATGACCCTAAACGGTGCTAATAGTGCAGACAGCGACAGTGACCCGAAAGAAAACGGCCTAGCGCCTGA
TGGTGCCAGCTGCCAAGGCCAGCCTGCCCTGCACTCAGAAAATCCCTTTGCTAAGGCAAACGGTCTTCCT
GGAAAGTTGATGCCTGCTCCTTTGCTGTCTCTCCCAGAAGACAAAATCTTAGAGACCTTCAGGCTTAGCA
ACAAACTGAAAGGCTCGACGGATGAAATGAGTGCACCTGGAGCAGAGAGGGGCCCTCCCGAGGACCGCGA
CGCCGAGCCTCAGCCTGGCAGCCCCGCCGCCGAATCCCTGGAGGAGCCAGATGCGGCCGCCGGCCTCAGC
AGCACCAAGAAGGCTCCGCCGCCCCGCGATCCCGGCACCCCCGCTACCAAAGAAGGCGCCTGGGAGGCCA
TGGCCGTCGCCCCCGAGGAGCCTCCGCCCAGCGCCGGCGAGGACATCGTGGGGGACACAGCACCCCCTGA
CCTGTGTGATCCCGGGAGCTTAACAGGCGATGCGAGCCCGTTGTCCCAGGACGCAAAGGGGATGATCGCG
GAGGGCCCGCGGGACTCGGCGTTGGCGGAAGCCCCGGAAGGGTTGAGTCCGGCTCCGCCTGCGCGGTCGG
AGGAGCCCTGCGAGCAGCCACTCCTTGTTCACCCCAGCGGGGACCACGCCCGGGACGCTCAGGACCCATC
CCAGAGCTTGGGCGCACCCGAGGCCGCAGAGCGGCCGCCAGCTCCTGTGCTGGACATGGCCCCGGCCGGT
CACCCGGAAGGGGACGCTGAGCCTAGCCCCGGCGAGAGGGTCGAGGACGCCGCGGCGCCGAAAGCCCCAG
GCCCTTCCCCAGCGAAGGAGAAAATCGGCAGCCTCAGAAAGGTGGACCGAGGCCACTACCGCAGCCGGAG
AGAGCGCTCGTCCAGCGGGGAGCCCGCCAGAGAGAGCAGGAGCAAGACTGAGGGCCACCGTCACCGGCGG
CGCCGCACCTGCCCCCGGGAGCGCGACCGCCAGGACCGCCACGCCCCGGAGCACCACCCCGGCCACGGCG
ACAGGCTCAGCCCTGGCGAGCGCCGCTCTCTGGGCAGGTGCAGTCACCACCACTCCCGACACCGGAGCGG
GGTGGAGCTGGACTGGGTCAGACACCACTACACCGAGGGCGAGCGTGGCTGGGGCCGGGAGAAGTTCTAC
CCCGACAGGCCGCGCTGGGACAGGTGCCGGTACTACCATGACAGGTACGCCCTGTACGCTGCCCGGGACT
GGAAGCCCTTCCACGGCGGCCGCGAGCACGAGCGGGCCGGGCTGCACGAGCGGCCGCACAAGGACCACAA
CCGGGGCCGTAGGGGCTGCGAGCCGGCCCGGGAGAGGGAGCGGCACCGCCCCAGCAGCCCCCGCGCAGGC
GCGCCCCACGCCCTCGCCCCGCACCCCGACCGCTTCTCCCACGACAGAACTGCACTTGTAGCCGGAGACA
ACTGTAACCTCTCTGATCGGTTTCACGAACACGAAAATGGAAAGTCCCGGAAACGGAGACACGACAGTGT
GGAGAACAGTGACAGTCATGTTGAAAAGAAAGCCCGGAGGAGCGAACAGAAGGATCCTCTAGAAGAGCCT
AAAGCAAAGAAGCACAAAAAATCAAAGAAGAAAAAGAAATCCAAAGACAAACACCGAGACCGCGACTCCA
GGCATCAGCAGGACTCAGACCTCTCAGCAGCGTGCTCTGACGCTGACCTCCACAGACACAAAAAAAAGAA
GAAGAAAAAGAAGAGACATTCAAGAAAATCAGAGGACTTTGTTAAAGATTCAGAACTGCACTTACCCAGG
GTCACCAGCTTGGAGACTGTCGCCCAGTTCCGGAGAGCCCAGGGTGGCTTTCCTCTCTCTGGTGGCCCGC
CTCTGGAAGGCGTCGGACCTTTCCGTGAGAAAACGAAACACTTACGGATGGAAAGCAGGGATGACAGGTG
TCGTCTCTTTGAGTATGGCCAGGGTGATTGA

Translation (1316 aa):
MTIVDKASESSDPSAYQNQPGSSEAVSPGDMDAGSASWGAVSSLNDVSNHTLSLGPVPGAVVYSSSSVPD
KSKPSPQKDQALGDGIAPPQKVLFPSEKICLKWQQTHRVGAGLQNLGNTCFANAALQCLTYTPPLANYML
SHEHSKTCHAEGFCMMCTMQAHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQ
KACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQFVKP
EQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGE
PIVYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIRSHDVKNGGE
LTHPTHSPGQSSPRPVISQRVVTNKQAAPGFIGPQLPSHMIKNPPHLNGTGPLKDTPSSSMSSPNGNSSV
NRASPVNASASVQNWSVNRSSVIPEHPKKQKITISIHNKLPVRQCQSQPNLHSNSLENPTKPVPSSTITN
SAVQSTSNASTMSVSSKVTKPIPRSESCSQPVMNGKSKLNSSVLVPYGAESSEDSDEESKGLGKENGIGT
IVSSHSPGQDAEDEEATPHELQEPMTLNGANSADSDSDPKENGLAPDGASCQGQPALHSENPFAKANGLP
GKLMPAPLLSLPEDKILETFRLSNKLKGSTDEMSAPGAERGPPEDRDAEPQPGSPAAESLEEPDAAAGLS
STKKAPPPRDPGTPATKEGAWEAMAVAPEEPPPSAGEDIVGDTAPPDLCDPGSLTGDASPLSQDAKGMIA
EGPRDSALAEAPEGLSPAPPARSEEPCEQPLLVHPSGDHARDAQDPSQSLGAPEAAERPPAPVLDMAPAG
HPEGDAEPSPGERVEDAAAPKAPGPSPAKEKIGSLRKVDRGHYRSRRERSSSGEPARESRSKTEGHRHRR
RRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCSHHHSRHRSGVELDWVRHHYTEGERGWGREKFY
PDRPRWDRCRYYHDRYALYAARDWKPFHGGREHERAGLHERPHKDHNRGRRGCEPARERERHRPSSPRAG
APHALAPHPDRFSHDRTALVAGDNCNLSDRFHEHENGKSRKRRHDSVENSDSHVEKKARRSEQKDPLEEP
KAKKHKKSKKKKKSKDKHRDRDSRHQQDSDLSAACSDADLHRHKKKKKKKKRHSRKSEDFVKDSELHLPR
VTSLETVAQFRRAQGGFPLSGGPPLEGVGPFREKTKHLRMESRDDRCRLFEYGQGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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