NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3649.1 Public Homo sapiens 4 C4orf17 24 110 108 CCDS HistoryNCBI Gene:84103Re-query CCDS DB by CCDS ID:3649.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3649.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326581.9 ENSP00000322582.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326581.9Link to Ensembl Protein Viewer:ENSP00000322582.4Re-query CCDS DB by Nucleotide ID:ENST00000326581Re-query CCDS DB by Protein ID:ENSP00000322582
Original member Current member NCBI NM_032149.3 NP_115525.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032149.3Link to Protein Sequence:NP_115525.2Re-query CCDS DB by Nucleotide ID:NM_032149Re-query CCDS DB by Protein ID:NP_115525Link to BLAST:NP_115525.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115525.2 359 Q53FE4-1 359 100% 0 0

Chromosomal Locations for CCDS 3649.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99513082 99513208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99522500 99522709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99524521 99524585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99529815 99529958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99537669 99537750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99539163 99539370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99540412 99540455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99541910 99542109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGAACCTCAACCCCCCGACATCTGCTCTTCAGATCGAGGGCAAAGGCAGCCATATTATGGCTAGAAATG
TAAGCTGCTTTCTAGTCAGGCACACCCCTCATCCCAGAAGAGTCTGCCACATCAAAGGCTTGAATAACAT
TCCAATCTGTACTGTGAATGATGATGAGAATGCATTTGGAACATTGTGGGGAGTTGGCCAGTCTAACTAC
TTAGAGAAGAACAGGATACCATTTGCCAATTGCAGTTACCCCTCCAGCACTGCAGTCCAGGAGAGCCCTG
TAAGAGGAATGTCGCCAGCCCCAAACGGTGCCAAAGTGCCTCCACGGCCTCATTCTGAGCCCAGTAGAAA
AATTAAAGAGTGCTTCAAAACTTCCAGTGAGAATCCCTTAGTAATTAAAAAGGAAGAAATTAAGGCCAAA
AGACCACCATCACCTCCAAAGGCATGCTCTACTCCTGGCTCCTGTTCTTCAGGGATGACAAGTACCAAGA
ATGATGTGAAAGCAAACACCATTTGCATACCAAACTATCTGGATCAGGAAATAAAAATCCTGGCAAAGCT
CTGTAGCATTTTGCATACTGATTCTCTGGCAGAAGTTTTACAGTGGCTGCTTCATGCAACTTCAAAAGAA
AAAGAGTGGGTCTCAGCTTTGATTCATTCTGAGCTTGCCGAGATAAACCTGTTAACTCATCACAGAAGAA
ACACCTCAATGGAACCAGCAGCAGAGACTGGGAAGCCACCCACAGTTAAATCACCACCCACAGTTAAATT
GCCCCCAAATTTTACTGCAAAATCAAAAGTGCTGACCAGAGATACAGAAGGGGATCAACCAACCAGAGTG
TCAAGTCAAGGATCTGAAGAAAACAAGGAAGTACCAAAAGAGGCTGAGCACAAGCCTCCACTACTTATAA
GAAGAAATAATATGAAAATACCTGTTGCAGAATATTTCAGCAAACCAAATTCTCCTCCCAGGCCTAACAC
TCAGGAGAGTGGATCAGCAAAACCAGTGTCAGCAAGGAGTATACAAGAATACAACCTCTGTCCCCAAAGA
GCATGTTATCCTTCAACACACCGGAGGTAG

Translation (359 aa):
MNLNPPTSALQIEGKGSHIMARNVSCFLVRHTPHPRRVCHIKGLNNIPICTVNDDENAFGTLWGVGQSNY
LEKNRIPFANCSYPSSTAVQESPVRGMSPAPNGAKVPPRPHSEPSRKIKECFKTSSENPLVIKKEEIKAK
RPPSPPKACSTPGSCSSGMTSTKNDVKANTICIPNYLDQEIKILAKLCSILHTDSLAEVLQWLLHATSKE
KEWVSALIHSELAEINLLTHHRRNTSMEPAAETGKPPTVKSPPTVKLPPNFTAKSKVLTRDTEGDQPTRV
SSQGSEENKEVPKEAEHKPPLLIRRNNMKIPVAEYFSKPNSPPRPNTQESGSAKPVSARSIQEYNLCPQR
ACYPSTHRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH