NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12685.1 Public Homo sapiens 19 CCDC8 24 110 108 CCDS HistoryNCBI Gene:83987Re-query CCDS DB by CCDS ID:12685.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307522.5 ENSP00000303158.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307522.5Link to Ensembl Protein Viewer:ENSP00000303158.3Re-query CCDS DB by Nucleotide ID:ENST00000307522Re-query CCDS DB by Protein ID:ENSP00000303158
Original member Current member NCBI NM_032040.5 NP_114429.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032040.5Link to Protein Sequence:NP_114429.2Re-query CCDS DB by Nucleotide ID:NM_032040Re-query CCDS DB by Protein ID:NP_114429Link to BLAST:NP_114429.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114429.2 538 Q9H0W5 538 100% 0 0

Chromosomal Locations for CCDS 12685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46411194 46412810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGCTGCAGATCGGGGAGGACGTCGACTATTTGCTCATCCCCCGGGAGGTCAGGCTGGCTGGGGGCGTCT
GGAGAGTCATCTCTAAGCCCGCCACCAAGGAAGCAGAATTTCGGGAGCGGCTGACCCAGTTCCTGGAAGA
AGAGGGCCGCACCCTGGAGGACGTGGCCCGCATCATGGAGAAGAGCACCCCGCACCCGCCCCAGCCCCCC
AAAAAGCCCAAGGAGCCCCGAGTGAGGAGGAGAGTGCAGCAGATGGTGACTCCTCCGCCCCGGCTGGTCG
TGGGCACGTACGACAGCAGCAACGCCAGCGACAGCGAGTTCAGCGACTTCGAGACCTCCAGAGACAAGAG
CCGCCAGGGCCCGCGGCGGGGCAAGAAGGTGCGCAAAATGCCCGTCAGCTACCTGGGCAGCAAGTTCCTG
GGAAGCGACCTGGAGAGTGAGGATGATGAGGAACTGGTCGAGGCCTTCCTCCGGCGACAGGAGAAGCAGC
CCAGCGCGCCGCCTGCCCGCCGCCGCGTCAACCTGCCAGTGCCCATGTTTGAGGACAACCTGGGGCCTCA
GCTGTCCAAAGCGGACAGGTGGCGGGAGTATGTCAGCCAGGTGTCCTGGGGGAAGCTGAAGCGGAGGGTG
AAGGGTTGGGCGCCGAGGGCGGGCCCCGGGGTGGGCGAGGCCCGGCTGGCCTCCACCGCAGTGGAGAGCG
CAGGGGTATCATCGGCGCCAGAGGGCACCAGCCCGGGGGATCGCTTGGGAAACGCGGGAGATGTTTGTGT
GCCCCAGGCTTCCCCTAGGCGATGGAGGCCCAAGATCAACTGGGCCTCCTTTCGGCGCCGCAGGAAGGAG
CAGACAGCACCCACAGGTCAGGGGGCAGACATCGAGGCTGATCAGGGGGGAGAGGCTGCAGATAGTCAAA
GGGAAGAGGCCATAGCTGACCAGCGGGAAGGGGCTGCAGGTAATCAGAGGGCAGGGGCCCCAGCTGACCA
GGGGGCAGAGGCTGCAGATAATCAGAGGGAAGAGGCTGCAGATAATCAGAGGGCAGGGGCCCCAGCTGAG
GAGGGGGCAGAGGCTGCAGATAACCAGAGGGAAGAGGCTGCAGATAATCAGAGGGCAGAGGCCCCAGCTG
ACCAGAGGTCACAGGGCACAGATAACCACAGGGAAGAGGCTGCAGATAATCAGAGGGCGGAGGCCCCAGC
TGACCAGGGGTCAGAGGTTACAGATAATCAAAGGGAAGAGGCCGTACATGACCAGAGGGAAAGGGCCCCA
GCTGTCCAGGGTGCAGATAATCAGAGGGCACAGGCCCGGGCTGGCCAGAGGGCAGAGGCTGCACATAATC
AGAGGGCAGGGGCCCCAGGTATCCAGGAAGCTGAAGTCTCAGCTGCCCAAGGGACCACAGGAACAGCTCC
AGGAGCCAGGGCCCGGAAACAGGTCAAGACAGTGAGGTTCCAGACCCCTGGACGCTTTTCGTGGTTTTGC
AAGCGCCGGAGAGCCTTCTGGCACACTCCCCGGTTGCCAACCCTGCCCAAGAGAGTCCCCAGGGCAGGAG
AGGCCAGGAACCTCAGGGTGCTGAGGGCCGAGGCCAGAGCAGAAGCTGAGCAGGGAGAGCAAGAAGACCA
GCTGTGA

Translation (538 aa):
MLQIGEDVDYLLIPREVRLAGGVWRVISKPATKEAEFRERLTQFLEEEGRTLEDVARIMEKSTPHPPQPP
KKPKEPRVRRRVQQMVTPPPRLVVGTYDSSNASDSEFSDFETSRDKSRQGPRRGKKVRKMPVSYLGSKFL
GSDLESEDDEELVEAFLRRQEKQPSAPPARRRVNLPVPMFEDNLGPQLSKADRWREYVSQVSWGKLKRRV
KGWAPRAGPGVGEARLASTAVESAGVSSAPEGTSPGDRLGNAGDVCVPQASPRRWRPKINWASFRRRRKE
QTAPTGQGADIEADQGGEAADSQREEAIADQREGAAGNQRAGAPADQGAEAADNQREEAADNQRAGAPAE
EGAEAADNQREEAADNQRAEAPADQRSQGTDNHREEAADNQRAEAPADQGSEVTDNQREEAVHDQRERAP
AVQGADNQRAQARAGQRAEAAHNQRAGAPGIQEAEVSAAQGTTGTAPGARARKQVKTVRFQTPGRFSWFC
KRRRAFWHTPRLPTLPKRVPRAGEARNLRVLRAEARAEAEQGEQEDQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH