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Report for CCDS52632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52632.1 Public Mus musculus 8 Nod2 23 108 98 CCDS HistoryNCBI Gene:257632Re-query CCDS DB by CCDS ID:52632.1Re-query CCDS DB by GeneID:257632See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 52632.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118370.7 ENSMUSP00000113773.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118370.7Link to Ensembl Protein Viewer:ENSMUSP00000113773.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118370Re-query CCDS DB by Protein ID:ENSMUSP00000113773
Original member Current member NCBI NM_145857.2 NP_665856.2 Accepted alive Link to Nucleotide Sequence:NM_145857.2Link to Protein Sequence:NP_665856.2Re-query CCDS DB by Nucleotide ID:NM_145857Re-query CCDS DB by Protein ID:NP_665856Link to BLAST:NP_665856.2

Chromosomal Locations for CCDS 52632.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 88652873 88653331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88660539 88660644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88663698 88665513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88670411 88670494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88670663 88670746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88672675 88672758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88674906 88674989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88675447 88675530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88681614 88681697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88684446 88684529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88686630 88686702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3042 nt):
ATGTGCTCACAGGAAGAGTTCCAGGCACAGAGGAGCCAGCTGGTGGCACTGCTGATCTCAGGGTCCTTGG
AGGGCTTTGAGAGCATCTTAGACTGGCTGCTGTCTTGGGATGTGCTCTCCAGGGAGGACTATGAGGGCCT
CAGCCTCCCTGGCCAACCTCTCTCCCATTCTGCCAGGCGTCTGCTGGACACAGTCTGGAACAAGGGTGTT
TGGGGCTGTCAGAAGCTCCTCGAAGCTGTGCAGGAGGCACAGGCCAACAGTCATACCTTTGAACTGTATG
GGTCCTGGGACACTCACTCCCTTCATCCAACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAG
ACTCTACAACCATGTAGAAGCCATGCTGGAGCTGGCAAGGGAGGGGGGGTTTCTGAGCCAGTACGAGTGT
GAGGAGATCAGGCTGCCAATCTTCACGTCGTCTCAGAGGGCAAGAAGGCTGCTTGATCTCGCTGCGGTGA
AGGCCAATGGACTGGCTGCCTTCCTTCTACAGCACGTCAGGGAACTACCAGCTCCACTGCCTCTGCCTTA
CGAGGCTGCTGAGTGTCAGAAGTTCATATCTAAGCTGAGGACCATGGTGTTGACTCAGTCTCGCTTCCTC
AGTACTTACGATGGGTCGGAGAATCTTTGCCTGGAGGATATATACACGGAGAACATCTTGGAGCTGCAGA
CTGAAGTGGGCACAGCCGGGGCCTTGCAGAAGAGCCCTGCCATCCTGGGCCTGGAGGACCTCTTTGATAC
CCATGGTCACCTGAACAGAGATGCCGACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACT
CTTCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTCCAGGAGTTTCTCTTCATTTTCCCAT
TCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCGCTGTCCCTGAGGACGCTGCTCTTTGAGCACTGCTG
CTGGCCTGATGTCGCTCAGGACGATGTCTTCCAGTTCCTTCTTGACCATCCTGACCGTGTCCTGTTAACC
TTTGATGGCTTGGACGAGTTCAAGTTCCGGTTCACCGACCGGGAGCGCCACTGCTCTCCAATTGACCCCA
CGTCAGTCCAGACTCTGCTCTTCAACCTTCTCCAGGGGAACCTGCTGAAGAATGCCTGCAAGGTGCTGAC
CAGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAAGTTCGTTCGCACAGAGTTGCAACTGAAGGGCTTC
TCTGAAGAGGGCATCCAACTGTACCTGAGAAAGCACCACCGGGAACCTGGGGTGGCAGACCGCCTCATCC
AGCTGATCCAAGCCACCTCAGCCCTGCATGGTTTGTGCCACCTCCCTGTCTTCTCTTGGATGGTGTCCAG
ATGCCACCGGGAACTTCTGCTGCAGAACAGGGGCTTCCCAACAACCAGCACGGACATGTACCTCCTGATC
CTGCAGCATTTCCTGCTGCATGCCTCCCCTCCGGACTCCTCCCCACTCGGTCTGGGACCTGGACTCCTCC
AAAGCCGGCTCTCCACCCTCCTGCACCTTGGCCACCTGGCTCTCCGGGGCCTGGCCATGAGCTGCTATGT
GTTCTCAGCCCAGCAGCTCCAGGCAGCTCAGGTTGACTCTGATGATATTTCTCTTGGTTTCCTGGTACGT
GCCCAAAGTAGTGTGCCCGGGAGCAAGGCGCCCCTGGAGTTCCTGCACATTACCTTCCAGTGCTTTTTTG
CCGCTTTCTACTTGGCTGTCAGTGCTGACACATCGGTGGCCTCTCTCAAGCACCTTTTCAGCTGTGGCCG
GCTGGGCAGCTCACTGCTGGGAAGGCTGCTGCCCAACCTGTGTATCCAGGGCTCCAGAGTCAAGAAGGGC
AGCGAAGCAGCCCTGCTGCAGAAGGCTGAGCCACACAACCTGCAAATCACAGCAGCCTTCCTAGCAGGTC
TGTTGTCCCAGCAGCATCGGGACCTGTTGGCTGCATGCCAGGTCTCCGAGAGGGTACTGCTCCAGCGTCA
GGCACGTGCCCGCTCGTGTCTGGCCCACAGCCTCCGCGAGCACTTCCATTCCATCCCGCCTGCCGTGCCC
GGTGAGACCAAGAGCATGCATGCTATGCCGGGCTTCATTTGGCTCATCCGTAGCCTGTACGAGATGCAGG
AGGAGCAGTTGGCCCAGGAGGCTGTCCGTCGCTTGGACATCGGGCACCTGAAGTTGACATTTTGCAGAGT
GGGCCCTGCAGAGTGTGCTGCACTGGCCTTTGTACTGCAACATCTCCAGCGGCCTGTGGCCCTACAGCTG
GATTACAACTCTGTGGGAGATGTTGGAGTGGAACAGCTGCGACCGTGCCTTGGGGTCTGCACAGCTCTGT
ATTTGCGAGATAACAATATCTCAGACCGAGGTGCCCGCACGCTGGTTGAGTGTGCTCTTCGCTGTGAGCA
GCTGCAGAAACTAGCTCTCTTCAACAACAAACTCACGGATGCGTGCGCCTGCTCCATGGCCAAGCTCCTT
GCACACAAGCAGAACTTCTTGTCCCTGAGGGTGGGGAACAATCACATCACAGCCGCTGGAGCCGAGGTGC
TGGCCCAGGGACTCAAGAGCAACACCTCCCTGAAGTTCCTGGGGTTCTGGGGCAACAGCGTGGGTGATAA
GGGCACCCAAGCCCTGGCTGAAGTTGTAGCCGACCACCAGAACCTAAAGTGGCTCAGCCTGGTAGGAAAC
AACATTGGCAGCATGGGTGCCGAAGCCCTAGCACTGATGCTGGAGAAGAACAAGTCACTAGAGGAACTCT
GCCTAGAGGAAAACCATATCTGTGACGAAGGGGTATATTCTCTCGCAGAAGGACTCAAGAGAAATTCAAC
TTTGAAATTCTTGAAACTGTCCAACAATGGCATCACCTACCGGGGTGCAGAAGCCCTCCTGCAGGCCCTC
AGCAGGAACAGTGCCATTCTGGAGGTTTGGCTTCGAGGGAACACATTCTCTTTGGAGGAAATCCAAACAC
TGAGCTCCAGGGACGCCAGACTCTTGTTGTGA

Translation (1013 aa):
MCSQEEFQAQRSQLVALLISGSLEGFESILDWLLSWDVLSREDYEGLSLPGQPLSHSARRLLDTVWNKGV
WGCQKLLEAVQEAQANSHTFELYGSWDTHSLHPTRDLQSHRPAIVRRLYNHVEAMLELAREGGFLSQYEC
EEIRLPIFTSSQRARRLLDLAAVKANGLAAFLLQHVRELPAPLPLPYEAAECQKFISKLRTMVLTQSRFL
STYDGSENLCLEDIYTENILELQTEVGTAGALQKSPAILGLEDLFDTHGHLNRDADTILVVGEAGSGKST
LLQRLHLLWATGRSFQEFLFIFPFSCRQLQCVAKPLSLRTLLFEHCCWPDVAQDDVFQFLLDHPDRVLLT
FDGLDEFKFRFTDRERHCSPIDPTSVQTLLFNLLQGNLLKNACKVLTSRPDAVSALLRKFVRTELQLKGF
SEEGIQLYLRKHHREPGVADRLIQLIQATSALHGLCHLPVFSWMVSRCHRELLLQNRGFPTTSTDMYLLI
LQHFLLHASPPDSSPLGLGPGLLQSRLSTLLHLGHLALRGLAMSCYVFSAQQLQAAQVDSDDISLGFLVR
AQSSVPGSKAPLEFLHITFQCFFAAFYLAVSADTSVASLKHLFSCGRLGSSLLGRLLPNLCIQGSRVKKG
SEAALLQKAEPHNLQITAAFLAGLLSQQHRDLLAACQVSERVLLQRQARARSCLAHSLREHFHSIPPAVP
GETKSMHAMPGFIWLIRSLYEMQEEQLAQEAVRRLDIGHLKLTFCRVGPAECAALAFVLQHLQRPVALQL
DYNSVGDVGVEQLRPCLGVCTALYLRDNNISDRGARTLVECALRCEQLQKLALFNNKLTDACACSMAKLL
AHKQNFLSLRVGNNHITAAGAEVLAQGLKSNTSLKFLGFWGNSVGDKGTQALAEVVADHQNLKWLSLVGN
NIGSMGAEALALMLEKNKSLEELCLEENHICDEGVYSLAEGLKRNSTLKFLKLSNNGITYRGAEALLQAL
SRNSAILEVWLRGNTFSLEEIQTLSSRDARLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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