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Report for CCDS27637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27637.1 Public Mus musculus 15 Pla2g6 23 108 98 CCDS HistoryNCBI Gene:53357Re-query CCDS DB by CCDS ID:27637.1Re-query CCDS DB by GeneID:53357See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047816.14 ENSMUSP00000044234.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047816.14Link to Ensembl Protein Viewer:ENSMUSP00000044234.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047816Re-query CCDS DB by Protein ID:ENSMUSP00000044234
Original member Current member EBI ENSMUST00000172403.8 ENSMUSP00000131081.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172403.8Link to Ensembl Protein Viewer:ENSMUSP00000131081.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000172403Re-query CCDS DB by Protein ID:ENSMUSP00000131081
Original member Current member EBI ENSMUST00000166977.8 ENSMUSP00000132071.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166977.8Link to Ensembl Protein Viewer:ENSMUSP00000132071.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166977Re-query CCDS DB by Protein ID:ENSMUSP00000132071
Original member Current member EBI ENSMUST00000173163.7 ENSMUSP00000134456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173163.7Link to Ensembl Protein Viewer:ENSMUSP00000134456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173163Re-query CCDS DB by Protein ID:ENSMUSP00000134456
Original member NCBI NM_001199024.1 NP_001185953.1 Updated not alive Link to Nucleotide Sequence:NM_001199024.1Link to Protein Sequence:NP_001185953.1Re-query CCDS DB by Nucleotide ID:NM_001199024Re-query CCDS DB by Protein ID:NP_001185953
Current member NCBI NM_001199024.2 NP_001185953.1 Accepted alive Link to Nucleotide Sequence:NM_001199024.2Link to Protein Sequence:NP_001185953.1Re-query CCDS DB by Nucleotide ID:NM_001199024Re-query CCDS DB by Protein ID:NP_001185953Link to BLAST:NP_001185953.1
Original member NCBI NM_001199025.1 NP_001185954.1 Updated not alive Link to Nucleotide Sequence:NM_001199025.1Link to Protein Sequence:NP_001185954.1Re-query CCDS DB by Nucleotide ID:NM_001199025Re-query CCDS DB by Protein ID:NP_001185954
Current member NCBI NM_001199025.2 NP_001185954.1 Accepted alive Link to Nucleotide Sequence:NM_001199025.2Link to Protein Sequence:NP_001185954.1Re-query CCDS DB by Nucleotide ID:NM_001199025Re-query CCDS DB by Protein ID:NP_001185954Link to BLAST:NP_001185954.1
Original member NCBI NM_016915.4 NP_058611.1 Updated not alive Link to Nucleotide Sequence:NM_016915.4Link to Protein Sequence:NP_058611.1Re-query CCDS DB by Nucleotide ID:NM_016915Re-query CCDS DB by Protein ID:NP_058611
Current member NCBI NM_016915.5 NP_058611.1 Accepted alive Link to Nucleotide Sequence:NM_016915.5Link to Protein Sequence:NP_058611.1Re-query CCDS DB by Nucleotide ID:NM_016915Re-query CCDS DB by Protein ID:NP_058611Link to BLAST:NP_058611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185953.1 752 P97819-2 752 100% 0 0
NP_001185954.1 752 P97819-2 752 100% 0 0
NP_058611.1 752 P97819-2 752 100% 0 0

Chromosomal Locations for CCDS 27637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79286751 79286895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79287110 79287183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79287616 79287783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79289131 79289285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79289579 79289715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79297299 79297449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79299032 79299195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79302619 79302697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79305703 79305811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79306284 79306466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79307313 79307409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79308669 79308856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79311794 79311977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79312948 79313163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79317761 79317969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGCAGTTCTTCGGACGCCTCGTCAACACCCTCAGTAGCGTCACCAACTTGTTCTCGAACCCATTCCGGG
TGAAGGAGGTGTCCCTGACTGACTACGTCTCAAGTGAACGTGTCCGGGAGGAAGGGCAGCTGATCCTGTT
ACAGAATGTCTCCAATCGCACCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGG
CTCTTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAACTTCCAGCAGTTCTCCTCCCAGCTGCCGCCCT
TCTACGAGAGCTCTGTGCAGGTCCTGCATGTGGAGGTGCTTCAGCACCTGACCGACCTCATCCGGAACCA
CCCCAGCTGGACAGTGACACACCTAGCCGTGGAGCTCGGCATCCGGGAGTGCTTCCATCACAGCCGCATC
ATCAGCTGTGCCAACAGCACAGAGAATGAGGAGGGCTGCACCCCACTACATCTGGCCTGCCGCAAGGGTG
ACAGTGAGATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAGATGGATGTCACTGACAACAAAGGAGA
GACTGCCTTCCATTACGCTGTGCAAGGGGACAATCCCCAGGTGCTACAGCTCCTAGGGAAGAACGCCTCA
GCCGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGG
AGATGGTGCGCGTCCTGCTGCTCTGTAATGCCCGCTGCAACATCATGGGGCCCGGTGGCTTCCCCATCCA
CACAGCCATGAAGTTTTCCCAGAAGGGGTGTGCTGAAATGATTATCAGCATGGACAGCAACCAGATCCAC
AGCAAGGATCCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAGAACGCCGAGATGGCCCGAATGCTGC
TGAAGCGGGGCTGTGACGTGGACAGCACTAGCTCCTCAGGGAACACAGCCCTGCATGTGGCGGTGATGCG
CAACCGCTTTGACTGTGTCATGGTGCTGCTGACCTACGGGGCTAATGCAGGTGCCCGCGGAGAGCACGGG
AACACGCCACTGCACCTGGCCATGTCGAAAGATAACATGGAGATGGTCAAAGCCCTCATTGTATTTGGGG
CAGAAGTGGACACCCCAAACGACTTTGGGGAGACTCCTGCATTGATAGCCTCCAAGATCAGCAAGCAGCT
TCAGGATCTCATGCCCATCTCTCGAGCCCGGAAGCCAGCGTTCATCCTGAGCTCCATGAGGGACGAGAAG
CGGAGTCACGACCACCTGCTCTGCCTGGACGGAGGGGGCGTGAAAGGCCTGGTCATTATCCAGCTTCTCA
TCGCCATCGAGAAGGCCTCGGGAGTGGCCACCAAGGACCTCTTCGACTGGGTGGCAGGAACCAGCACAGG
GGGCATCCTGGCCCTGGCCATTCTGCACAGTAAATCCATGGCCTATATGCGTGGTGTGTACTTCCGTATG
AAGGACGAGGTGTTTCGGGGCTCACGGCCCTATGAGTCTGGGCCCCTGGAGGAGTTCCTGAAGCGGGAGT
TTGGGGAGCACACCAAGATGACAGATGTCAAAAAACCCAAGGTGATGCTGACAGGGACACTGTCTGACCG
GCAGCCAGCAGAGCTCCACCTATTCCGGAATTACGATGCTCCCGAAGCCGTTCGAGAGCCCCGCTGCAAC
CAAAACATTAACCTGAAGCCACCGACTCAGCCTGCAGACCAACTGGTATGGCGTGCAGCCCGGAGCAGTG
GGGCAGCCCCAACCTATTTCCGGCCCAATGGACGCTTCCTGGATGGAGGGCTGCTGGCCAACAACCCCAC
ACTGGATGCCATGACTGAAATCCATGAGTACAATCAGGACATGATCCGCAAGGGCCAGGGCAACAAGGTG
AAGAAACTCTCCATAGTCGTTTCTCTGGGGACAGGAAAGTCCCCTCAAGTGCCTGTAACCTGTGTAGATG
TCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGGT
CGTGGACTGTTGCACAGATCCAGATGGGCGGGCTGTGGATCGGGCCCGGGCCTGGTGCGAGATGGTCGGC
ATCCAGTACTTCAGACTGAACCCCCAGCTAGGGTCCGACATCATGCTGGACGAGGTCAGTGATGCAGTGC
TGGTCAACGCCCTCTGGGAGACCGAGGTCTACATCTATGAGCACCGAGAGGAGTTCCAGAAGCTTGTCCA
GCTGCTGCTGTCTCCCTGA

Translation (752 aa):
MQFFGRLVNTLSSVTNLFSNPFRVKEVSLTDYVSSERVREEGQLILLQNVSNRTWDCVLVSPRNPQSGFR
LFQLESEADALVNFQQFSSQLPPFYESSVQVLHVEVLQHLTDLIRNHPSWTVTHLAVELGIRECFHHSRI
ISCANSTENEEGCTPLHLACRKGDSEILVELVQYCHAQMDVTDNKGETAFHYAVQGDNPQVLQLLGKNAS
AGLNQVNNQGLTPLHLACKMGKQEMVRVLLLCNARCNIMGPGGFPIHTAMKFSQKGCAEMIISMDSNQIH
SKDPRYGASPLHWAKNAEMARMLLKRGCDVDSTSSSGNTALHVAVMRNRFDCVMVLLTYGANAGARGEHG
NTPLHLAMSKDNMEMVKALIVFGAEVDTPNDFGETPALIASKISKQLQDLMPISRARKPAFILSSMRDEK
RSHDHLLCLDGGGVKGLVIIQLLIAIEKASGVATKDLFDWVAGTSTGGILALAILHSKSMAYMRGVYFRM
KDEVFRGSRPYESGPLEEFLKREFGEHTKMTDVKKPKVMLTGTLSDRQPAELHLFRNYDAPEAVREPRCN
QNINLKPPTQPADQLVWRAARSSGAAPTYFRPNGRFLDGGLLANNPTLDAMTEIHEYNQDMIRKGQGNKV
KKLSIVVSLGTGKSPQVPVTCVDVFRPSNPWELAKTVFGAKELGKMVVDCCTDPDGRAVDRARAWCEMVG
IQYFRLNPQLGSDIMLDEVSDAVLVNALWETEVYIYEHREEFQKLVQLLLSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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