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Report for CCDS29438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29438.1 Public Mus musculus 19 Ccs 23 108 98 CCDS HistoryNCBI Gene:12460Re-query CCDS DB by CCDS ID:29438.1Re-query CCDS DB by GeneID:12460See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037246.6 ENSMUSP00000035486.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037246.6Link to Ensembl Protein Viewer:ENSMUSP00000035486.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037246Re-query CCDS DB by Protein ID:ENSMUSP00000035486
Original member NCBI NM_016892.3 NP_058588.1 Updated not alive Link to Nucleotide Sequence:NM_016892.3Link to Protein Sequence:NP_058588.1Re-query CCDS DB by Nucleotide ID:NM_016892Re-query CCDS DB by Protein ID:NP_058588
Current member NCBI NM_016892.4 NP_058588.1 Accepted alive Link to Nucleotide Sequence:NM_016892.4Link to Protein Sequence:NP_058588.1Re-query CCDS DB by Nucleotide ID:NM_016892Re-query CCDS DB by Protein ID:NP_058588Link to BLAST:NP_058588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058588.1 274 Q9WU84 274 100% 0 0

Chromosomal Locations for CCDS 29438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4825511 4825664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4825770 4825873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4825944 4826021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4832833 4832893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4833341 4833518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4834173 4834310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4838831 4838903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4839197 4839235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGCTTCGAAGTCGGGGGACGGTGGGACTGTGTGTGCGTTGGAGTTTGCAGTGCAGATGAGTTGTCAGA
GCTGTGTGGATGCTGTGCACAAGACCCTGAAAGGGGTGGCAGGTGTCCAGAATGTGGACGTTCAGTTGGA
GAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGG
AGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTACAGAATCTGGGAGCAGCAGTGGCCATTCTGG
AGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGG
AACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGAC
TGCAATAGCTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGGC
ACCGGGGAGATCTGGGCAATGTCCGGGCTGAAGCTGGTGGCCGAGCTACCTTCCGGATAGAGGATAAACA
GCTGAAGGTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGA
GGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGGTTGGCCTGTGGCATCATTGCACGCTCTG
CCGGCCTTTTCCAGAACCCCAAGCAGATCTGCTCCTGTGATGGCCTCACTATCTGGGAGGAGCGAGGCCG
GCCCATTGCCGGTCAAGGCCGAAAGGACTCAGCCCAACCCCCAGCTCACCTCTAA

Translation (274 aa):
MASKSGDGGTVCALEFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTG
RQAVLKGMGSSQLQNLGAAVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRD
CNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVWDVIGRSLVIDEGEDDLGRG
GHPLSKITGNSGKRLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIAGQGRKDSAQPPAHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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