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Report for CCDS38543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38543.1 Public Mus musculus 3 Vps72 23 108 98 CCDS HistoryNCBI Gene:21427Re-query CCDS DB by CCDS ID:38543.1Re-query CCDS DB by GeneID:21427See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009102.8 ENSMUSP00000009102.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009102.8Link to Ensembl Protein Viewer:ENSMUSP00000009102.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000009102Re-query CCDS DB by Protein ID:ENSMUSP00000009102
Original member Current member NCBI NM_009336.2 NP_033362.2 Accepted alive Link to Nucleotide Sequence:NM_009336.2Link to Protein Sequence:NP_033362.2Re-query CCDS DB by Nucleotide ID:NM_009336Re-query CCDS DB by Protein ID:NP_033362Link to BLAST:NP_033362.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033362.2 368 Q62481 368 100% 0 0

Chromosomal Locations for CCDS 38543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95111098 95111214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95118225 95118377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95118649 95118763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95119131 95119307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95121262 95121406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95122379 95122778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGAGTTTGGCTGGGGGCCGGGCCCCACGGAAAACCGCTGGGAACCGGCTTTCTGGGCTCCTGGAAGCAG
AGGAGGAAGATGAGTTCTACCAGACAACTTACGGGGGTTTCACCGAGGAATCTGGAGATGATGAGTATCA
AGGAGACCAGTCTGATACGGAGGATGAGGTAGACTCTGACTTTGACATTGATGAAGGGGATGAACCATCC
AGTGATGGAGAAGCGGAAGAGCCAAGGAGGAAGCGCAGAGTCGTCACCAAAGCCTATAAGGAGCCTCTAA
AGAGCTTGAGGCCTCGCAAGGTCAGCACCCCAGCAAGCAGCTCCCAGAAGGCCAGAGAGGAGAAGACGCT
GCTGCCACTGGAGCTCCAGGACGATGGCTCTGACAGCCGCAAGTCTATGCGTCAGTCTACAGCTGAGCAC
ACACGACAAACGTTCCTTCGGGTTCAAGAGAGGCAAGGACAGTCCCGGAGGCGGAAGGGTCCCCACTGTG
AGCGACCACTAACCCAGGAAGAGCTGCTCAGGGAGGCCAAGATCACTGAAGAGCTCAACTTACGTTCACT
CGAGACCTATGAAAGGCTGGAGGCTGACAAAAAGAAGCAGGTTCACAAGAAGCGGAAGTGCCCTGGGCCA
ATAATCACCTACCACTCAGTGACGGTGCCGCTTGTTGGGGAGCCCGGCCCCAAGGAGGAAAATGTGGACG
TGGAAGGCCTTGATCCTGCTCCTACAGCCTCTGCACTGGCTCCACATGCTGGGACCGGGACTGGAGCTGC
CGCTGCCACCCCTCCTGCTCACTGCTCTCGCACCTTCATCACGTTCAGTGATGATGCAACGTTTGAAGAG
TGGTTCCCCCAGGGGCGACCCCCGAAGGTCCCGGTGCGGGAGGTCTGCCCAGTGACCCACCGTCCAGCTT
TGTACCGGGACCCTGTTACAGACATACCCTATGCCACTGCTAGAGCCTTCAAGATCATCCGTGAGGCGTA
CAAGAAGTACATCACTGCCCACGGACTTCCACCCACCGCCTCGGCGCTGGGCCCCGGGCCCCCACCCCCC
GAGCCACTACCTGGCTCTGGGCCTCGAGCCTTGCGTCAGAAGATTGTCATCAAATAG

Translation (368 aa):
MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPS
SDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVSTPASSSQKAREEKTLLPLELQDDGSDSRKSMRQSTAEH
TRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGP
IITYHSVTVPLVGEPGPKEENVDVEGLDPAPTASALAPHAGTGTGAAAATPPAHCSRTFITFSDDATFEE
WFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPP
EPLPGSGPRALRQKIVIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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