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Report for CCDS30847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30847.1 Public Homo sapiens 1 H4C14 24 110 108 CCDS HistoryNCBI Gene:8370Re-query CCDS DB by CCDS ID:30847.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30847.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000578186.3 ENSP00000462667.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000578186.3Link to Ensembl Protein Viewer:ENSP00000462667.1Re-query CCDS DB by Nucleotide ID:ENST00000578186Re-query CCDS DB by Protein ID:ENSP00000462667
Original member Current member EBI ENST00000614272.1 ENSP00000478519.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614272.1Link to Ensembl Protein Viewer:ENSP00000478519.1Re-query CCDS DB by Nucleotide ID:ENST00000614272Re-query CCDS DB by Protein ID:ENSP00000478519
Original member Current member EBI ENST00000618193.1 ENSP00000478786.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618193.1Link to Ensembl Protein Viewer:ENSP00000478786.1Re-query CCDS DB by Nucleotide ID:ENST00000618193Re-query CCDS DB by Protein ID:ENSP00000478786
Original member Current member EBI ENST00000613412.1 ENSP00000481343.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613412.1Link to Ensembl Protein Viewer:ENSP00000481343.1Re-query CCDS DB by Nucleotide ID:ENST00000613412Re-query CCDS DB by Protein ID:ENSP00000481343
Original member Current member NCBI NM_003548.2 NP_003539.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003548.2Link to Protein Sequence:NP_003539.1Re-query CCDS DB by Nucleotide ID:NM_003548Re-query CCDS DB by Protein ID:NP_003539Link to BLAST:NP_003539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003539.1 103 P62805 103 100% 0 0

Chromosomal Locations for CCDS 30847.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 149832685 149832996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGTCCGGCAGAGGAAAGGGCGGAAAAGGCTTAGGCAAAGGGGGCGCTAAGCGCCACCGCAAGGTCTTGA
GAGACAACATTCAGGGCATCACCAAGCCTGCCATTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGAT
CTCTGGCCTCATTTACGAGGAGACCCGCGGTGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGGGACGCA
GTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCC
AGGGGCGCACCCTGTACGGCTTCGGAGGCTAG

Translation (103 aa):
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDA
VTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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