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Report for CCDS21407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21407.1 Public Mus musculus 7 Btbd1 23 108 98 CCDS HistoryNCBI Gene:83962Re-query CCDS DB by CCDS ID:21407.1Re-query CCDS DB by GeneID:83962See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21407.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026093.8 ENSMUSP00000026093.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026093.8Link to Ensembl Protein Viewer:ENSMUSP00000026093.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026093Re-query CCDS DB by Protein ID:ENSMUSP00000026093
Original member Current member NCBI NM_146193.2 NP_666305.2 Accepted alive Link to Nucleotide Sequence:NM_146193.2Link to Protein Sequence:NP_666305.2Re-query CCDS DB by Nucleotide ID:NM_146193Re-query CCDS DB by Protein ID:NP_666305Link to BLAST:NP_666305.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666305.2 488 P58544 488 100% 0 0

Chromosomal Locations for CCDS 21407.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81793568 81793726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81794158 81794304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81796996 81797083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81800958 81801150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81805742 81805939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81815915 81816020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81818195 81818351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81828973 81829391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGCCTCGCTCGGGTCAGCCGCGGCCGGGGAGCCGGCGACCGGAGCTGAGGCGGAGCCCGGCCCTCCGG
CCCCGCCGCCGCCTCCGCCGCCGCCACCGGCTCCCTCGCCGTCCGCTCTCGGGCCGCTGCTGCCCCTGCA
GCGCGAGCCGCTGTACAACTGGCAGGCCACCAAGGCGTCGCTCAAGGAGCGCTTCGCCTTCCTCTTCAAC
TCGGAGCTGCTGAGCGATGTGCGTTTCGTGCTGGGCAAGGGCCGAGGCGCGGCGGCCGCCGGGGGCCCGC
AGCGCATCCCCGCCCACCGCTTCGTGCTGGCGGCCGGCAGCGCGGTCTTCGACGCCATGTTCAACGGCGG
CATGGCCACGACGTCGGCCGAGATCGAGCTGCCGGACGTGGAGCCCGCCGCCTTCCTGGCGCTGCTGAGA
TTTTTGTATTCAGACGAAGTTCAAATTGGTCCAGAAACCGTTATGACCACTCTTTATACTGCTAAGAAAT
ATGCAGTCCCTGCCTTGGAAGCACATTGCGTAGAATTTCTCACCAAACATCTTAGGGCAGATAATGCCTT
TATGTTGCTTACTCAGGCGCGGTTGTTCGATGAGCCCCAGCTGGCTAGTCTTTGTCTGGACACCATAGAC
AAGAGCACAGTGGATGCAATCAGTGCGGAGGGGTTTACTGATATTGACATAGATACACTCTGTGCAGTTC
TAGAAAGAGACACACTGAGTATCCGAGAAAGTCGACTTTTTGGAGCTATTGTACGTTGGGCAGAAGCAGA
GTGTCAGAGACAACAACTGGCTGTGACATTTGGAAACAAACAGAAAGTTCTAGGAAAAGCACTTTCCTTA
ATCCGCTTCCCACTGATGACAATTGAGGAGTTTGCAGCAGGTCCTGCTCAATCTGGAATTTTGTCAGACC
GTGAAGTGGTAAACCTCTTTCTTCATTTTACCGTCAATCCTAAACCCCGAGTAGAGTACATTGATCGGCC
ACGATGCTGCCTCAGAGGAAAGGAGTGCTGCATCAACCGATTCCAGCAAGTAGAGAGCCGCTGGGGTTAC
AGTGGGACAAGCGATCGCATCAGGTTCACAGTTAACAGAAGAATCTCTGTAGTTGGATTTGGTTTGTATG
GATCTATTCACGGGCCCACGGATTATCAAGTGAATATACAGATCATTGAATATGAGAAAAAACAAACCTT
GGGACAGAATGATACTGGATTTAGTTGTGATGGGACTGCTAACACATTCAGGGTCATGTTCAAAGAACCT
ATAGAGATCCTGCCCAATGTCTGTTACACAGCGTGCGCAACACTCAAGGGCCCAGATTCTCACTATGGCA
CAAAAGGACTGAAGAAAGTAGTGCATGAGACCCCTGCTGCAAGCAAGACTGTTTTCCTATTTTTCAGTTC
CCCTGGCAATAACAATGGCACATCAATAGAAGATGGACAAATACCAGAAATAATATTTTATACATAA

Translation (488 aa):
MASLGSAAAGEPATGAEAEPGPPAPPPPPPPPPAPSPSALGPLLPLQREPLYNWQATKASLKERFAFLFN
SELLSDVRFVLGKGRGAAAAGGPQRIPAHRFVLAAGSAVFDAMFNGGMATTSAEIELPDVEPAAFLALLR
FLYSDEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLTKHLRADNAFMLLTQARLFDEPQLASLCLDTID
KSTVDAISAEGFTDIDIDTLCAVLERDTLSIRESRLFGAIVRWAEAECQRQQLAVTFGNKQKVLGKALSL
IRFPLMTIEEFAAGPAQSGILSDREVVNLFLHFTVNPKPRVEYIDRPRCCLRGKECCINRFQQVESRWGY
SGTSDRIRFTVNRRISVVGFGLYGSIHGPTDYQVNIQIIEYEKKQTLGQNDTGFSCDGTANTFRVMFKEP
IEILPNVCYTACATLKGPDSHYGTKGLKKVVHETPAASKTVFLFFSSPGNNNGTSIEDGQIPEIIFYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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