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Report for CCDS19967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19967.1 Public Mus musculus 6 Strip2 23 108 98 CCDS HistoryNCBI Gene:320609Re-query CCDS DB by CCDS ID:19967.1Re-query CCDS DB by GeneID:320609See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046028.11 ENSMUSP00000036477.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046028.11Link to Ensembl Protein Viewer:ENSMUSP00000036477.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046028Re-query CCDS DB by Protein ID:ENSMUSP00000036477
Original member Current member NCBI NM_177204.3 NP_796178.2 Accepted alive Link to Nucleotide Sequence:NM_177204.3Link to Protein Sequence:NP_796178.2Re-query CCDS DB by Nucleotide ID:NM_177204Re-query CCDS DB by Protein ID:NP_796178Link to BLAST:NP_796178.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796178.2 844 Q8C9H6-1 844 100% 0 0

Chromosomal Locations for CCDS 19967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29917075 29917230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29920462 29920531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29923915 29923989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29924966 29925103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29926557 29926677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29927321 29927389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29927587 29927693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29928435 29928562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29929780 29929983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29931120 29931355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29931764 29931829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29932203 29932266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29932990 29933061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29937581 29937655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29938462 29938559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29939037 29939163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29941839 29941939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29944426 29944492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29953349 29953453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29955432 29955636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29956658 29956908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2535 nt):
ATGGACGACCCCGCGGCACCGGGGCCCGCCGGCTCTCCTGCTAATGACAACGGCAACGGGAACGGCAATG
GGAACGGGAACGGCAACGGCGGCAAAGGGAAGCCGGCCGTGCCCAAGGGCAGGGAAACGTTCCGCAACCA
GCGGCGGGAGTCGGAGGGCTCTGTGGACTGCCCTACTCTGGAGTTTGAATATGGAGATTCAGACGGGCAT
GCAGCAGAATTGTCAGAATTATATAGCTACACGGAGAACCTGGAATTTACCACTAACAGGAAGTGCTTTG
AAGAAGATTTCAGGACTCAAGTGCAAGACACTAAGGAATGGCTGGAGTTGGAAGAAGATGCCCAGAAGAC
CTATGTGATGGGACTTCTGGACCGACTGGAGGTGGTCAGTAGGGAGAAACGGCTTAAGGTGGCCCGGGCT
GTTCTCTATCTAGCTCAAGGCACTTTCGGGGAATGTGATTCCGAGGTCGATGTGCTACACTGGTCCAGAT
ACAATTGCTTCCTGCTCTACCAGATGGGGACCTTCTCGGCCTTCCTGGAGCTACTCCACATGGAAATCGA
CAACAGCCAGGCCTCGAGTAGTGCCCTTCGGAAACCAGCTGTCTCCATTGCTGACAGCACTGAGCTCAGG
GTACTGCTGAGTGTCATGTACCTAATGGTGGAAAATATCCGCCTGGAGCGAGAAATAGACCCTTGTGGGT
GGAGGACAGCCCGAGAGACCTTCCGAACTGAACTGAGTTTCTCCACACATAATGAAGAGCCGTTTGCACT
CCTGCTGTTTTCCATGGTTACCAAATTCTGCAGTGGCCTGGCCCCCCACTTTCCAATAAAGAAGGTTCTG
CTTCTGCTCTGGAAGGTGGTCATGTTTACCCTTGGTGGATTTGAGCACCTTCAGGCTCTCAAAATACAGA
AGCGTGCAGAGTTGGGCCTGCCTCCACTAGCTGAAGACAGTATCCAGGTTGTAAAGAGCATGCGTGCTGC
CTCCCCGCCTTCTTACACTCTTGATCTGGGGGAGTCTCAGCTGGCTCCTCCACCCTCCAAGCTGCGGGGA
CGCCGTGGTTCTCGAAGGCAACTCCTCACCAAGCAAGACAGCCTGGACATCTACAATGAAAGGGATCTCT
TCAAGACTGAGGAACCAGCCACAGAGGAGGAAGAAGAATCTGCGGCTGATGGAGAACGAACCTTGGATGG
AGAGTTAGACCTGCTAGAACAGGATCCTCTGGTGCCACCTCCACCCTCACAGACACCTCTCTCTACTGAC
CGGGTAGCCTTTCCCAAGGGCCTGCCCTGGGCCCCGAAGGTTAGACAGAAGGATATTGAACACTTCTTGG
AGATGAGCAGAAACAAGTTCATTGGATTCACTCTGGGGCAGGACACAGATACCTTGGTTGGATTACCTCG
ACCCATCCATGAGAGTGTGAAGACTCTAAAGCAGCACAAGTATATCTCCATTGCAGATATACAGATAAAG
AATGAAGAGGAGCTGGAGAAATGTCCCTTGTCTTTGGGAGAAGAGGTGGTACCAGAAACACCGAGTGAAA
TCCTCTACCAGGGCATGCTGTACAGCCTCCCCCAGTACATGATTGCACTGCTTAAGATTCTGCTGGCTGC
AGCTCCCACCTCCAAGGCTAAGACAGACTCTATCAATATCCTGGCAGATGTCCTGCCTGAAGAGATGCCT
GTAACTGTTCTCCAGAGCATGAAGCTAGGCATTGACGTGAACAGACACAAGGAAATCATTGTAAAGAGTA
TCTCTGCCCTGCTCCTTCTACTTCTCAAACACTTCAAACTCAACCATATCTACCAGTTTGAATATGTATC
ACAACATTTAGTGTTTGCCAACTGCATCCCCTTGATCCTGAAGTTCTTCAATCAAAACATCCTGTCCTAT
ATCACTGCCAAAAACAGCATTTCAGTGCTGGATTACCCGTGCTGCACCATCCAGGATTTGCCAGAGCTTA
CTACCGAGAGTCTGGAAGCCGGAGACAATAGCCAGTTCTGCTGGAGGAACCTCTTTTCCTGCATCAACCT
CCTGAGGCTGCTCAATAAGCTGACCAAATGGAAGCATTCCAGGACCATGATGTTAGTGGTGTTTAAGTCA
GCTCCAATCTTAAAGCGAGCTCTCAAAGTCAAACAGGCCATGCTACAACTTTATGTCCTGAAGCTACTAA
AGATACAGACCAAGTACCTTGGGCGCCAGTGGAGAAAAAGCAACATGAAGACCATGTCAGCCATTTACCA
GAAAGTGCGCCACCGCATGAATGATGACTGGGCTTATGGGAATGACATCGATGCCAGACCATGGGACTTC
CAAGCAGAAGAATGTACCCTGAGGGCCAACATTGAGGCTTTTAACAGCCGCCGATATGATAAGCCTCAGG
ACTCAGAATTCTCACCTGTGGATAACTGCTTGCAGAGCGTGCTGGGGCAGAGGCTAGATCTGCCTGAAGA
TTTCCATTATTCCTATGAGCTCTGGCTGGAGAGAGAGGTGTTCTCACAGCCCATCTGCTGGGAGGAGCTG
CTCCAGAATCACTGA

Translation (844 aa):
MDDPAAPGPAGSPANDNGNGNGNGNGNGNGGKGKPAVPKGRETFRNQRRESEGSVDCPTLEFEYGDSDGH
AAELSELYSYTENLEFTTNRKCFEEDFRTQVQDTKEWLELEEDAQKTYVMGLLDRLEVVSREKRLKVARA
VLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSAFLELLHMEIDNSQASSSALRKPAVSIADSTELR
VLLSVMYLMVENIRLEREIDPCGWRTARETFRTELSFSTHNEEPFALLLFSMVTKFCSGLAPHFPIKKVL
LLLWKVVMFTLGGFEHLQALKIQKRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRG
RRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAADGERTLDGELDLLEQDPLVPPPPSQTPLSTD
RVAFPKGLPWAPKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADIQIK
NEEELEKCPLSLGEEVVPETPSEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMP
VTVLQSMKLGIDVNRHKEIIVKSISALLLLLLKHFKLNHIYQFEYVSQHLVFANCIPLILKFFNQNILSY
ITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRNLFSCINLLRLLNKLTKWKHSRTMMLVVFKS
APILKRALKVKQAMLQLYVLKLLKIQTKYLGRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDF
QAEECTLRANIEAFNSRRYDKPQDSEFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEEL
LQNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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