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Report for CCDS42860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42860.1 Public Homo sapiens 20 DEFB116 24 110 108 CCDS HistoryNCBI Gene:245930Re-query CCDS DB by CCDS ID:42860.1Re-query CCDS DB by GeneID:245930See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400549.1 ENSP00000383396.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400549.1Link to Ensembl Protein Viewer:ENSP00000383396.1Re-query CCDS DB by Nucleotide ID:ENST00000400549Re-query CCDS DB by Protein ID:ENSP00000383396
Original member Current member NCBI NM_001037731.1 NP_001032820.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037731.1Link to Protein Sequence:NP_001032820.1Re-query CCDS DB by Nucleotide ID:NM_001037731Re-query CCDS DB by Protein ID:NP_001032820Link to BLAST:NP_001032820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032820.1 102 Q30KQ4 102 100% 0 0

Chromosomal Locations for CCDS 42860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 31303212 31303453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31308519 31308585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGTCAGTCATGAAGCCCTGTTTAATGACCATTGCCATCCTTATGATCCTGGCTCAAAAGACTCCAGGTG
GCCTGTTCAGATCCCACAATGGCAAGAGCCGAGAGCCTTGGAATCCATGTGAGCTTTACCAAGGCATGTG
CAGAAACGCCTGCAGAGAATATGAAATCCAATACTTAACCTGCCCAAATGATCAAAAGTGCTGCCTGAAA
CTTTCTGTGAAAATAACCAGTTCTAAAAATGTGAAGGAGGATTACGACTCTAACTCCAACTTGTCAGTTA
CAAACAGTTCAAGCTACTCTCACATTTGA

Translation (102 aa):
MSVMKPCLMTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTCPNDQKCCLK
LSVKITSSKNVKEDYDSNSNLSVTNSSSYSHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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