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Report for CCDS30403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30403.1 Public Mus musculus X Pramel3a 23 108 98 CCDS HistoryNCBI Gene:83565Re-query CCDS DB by CCDS ID:30403.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113176.2 ENSMUSP00000108801.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113176.2Link to Ensembl Protein Viewer:ENSMUSP00000108801.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113176Re-query CCDS DB by Protein ID:ENSMUSP00000108801
Original member Current member NCBI NM_031390.2 NP_113567.1 Accepted alive Link to Nucleotide Sequence:NM_031390.2Link to Protein Sequence:NP_113567.1Re-query CCDS DB by Nucleotide ID:NM_031390Re-query CCDS DB by Protein ID:NP_113567Link to BLAST:NP_113567.1

Chromosomal Locations for CCDS 30403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135307343 135307632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135308937 135309521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135310099 135310612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGACACCAAGGACCCGCCCACACTATTGGATCTTGCTACACAGAGTCTATTGAGTAATGAGCATGCAG
CAATCCAAGCCCTGGAGGAGATCCCAAGGGAGCTTTTTGTCCCTTTGTTCACTGCTGCCTTCACGGGTAG
ACACAAGAATATACTGACAGCAATTGTGAAAGCTTGGCCTTTTGCCTGTCTCCACATTGGGGCATTAAGT
GTGCAGGAACCTGAGCGTGAACTCCTGAAAGCCTTGATTGAGAGTCTTCAGTTCCTCCCTGCCCTGAACT
CAGCTACTAGGAGCCCTAAACTGAGGATCCTAGATTTAAGGCAGGATGCTGGCTGCAAGACCGTATGTCC
TGAGATCAGTACTAATTCGACAATTTGCTTTCGTTCTTGTGCTCACTCTGAGCACTCTATCTTCAAAATT
GAAGGCCAGGAGAGTCTTTCAAGTTCCAAGTCTGAAGCTCAGCCCTCTAGGCTGCCTATGGAATTGATAG
TGGACATTTCCCTTGATGGCACTTTGAGGGAAAGGAATTTTTTTGCTTTGCTTCAGAATAAAGTAGAGCA
GAGCCTAGGCTCTCTGCACCTGTGCTGCAGAGATTTGCAAATTAATAACTTGTGTGAATGCAGACATGCA
TTAAGCCATCTGGATCTGAAATGTGTTGATCACCTTGCAGTTGATGAGTCTCCTCTTACTGAAGTCACCA
AACTTTTATCTCATACAATACAGCTGGACAGTCTTAGCCTGTCTAAAATCGCTTGTAGATCTTTGAATGG
GAGAACCTTTAGAAATTTTATCACCCAACTGAGTCATATGAACCACCTGAAGGAGCTCAGCTTGTCTTCA
TTCTGCCTCACAGATCATCTTGAAACTGTCCTGAGAGTACTATCTACTGATTTGGAGTTCTTATATCTAC
CGTTCTGTGGACTTTCTTACAGTGACTTCAAGTTTCTCTCTGAGTGCTCTCAAGTCAGTCATTTAAAGTT
GCTGAATGTCAACAACAATCCAATATATTGGGAAGATTGTGAGCCATTTTATTATCTCCTGCAGAATGTT
TCTAGCACCTTGCAGCATCTGAAAATTTGTTATTGCTTTTTAACAGATTCTACAATCTCTGTTCTTATCC
CAGCCCTAACCCGGTGTTCTCAACTTCGAGTGCTTCACTTTTATTCAAATCAAATTACCATGGGCATGCT
TATGAGAATTCTTGAGCTATTAACACCATTGAAGGAGCTTAAACATGTGATCTATCCCATCCCTGTCCAT
TGCTATGGGAGGTGGCATTTTCAAGGCAGTTTAGATAGACAGAAGGTTGAAGATGTGCAGAGACAATTGA
ACTTAATGCTACAGGAGGCAGAAAGGAGTGATATGAATTGGATCACTTACTCTGATTAA

Translation (462 aa):
MDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALS
VQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPEISTNSTICFRSCAHSEHSIFKI
EGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHA
LSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSHMNHLKELSLSS
FCLTDHLETVLRVLSTDLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNV
SSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVH
CYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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