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Report for CCDS41152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41152.1 Public Mus musculus X Tex13b 23 108 98 CCDS HistoryNCBI Gene:83555Re-query CCDS DB by CCDS ID:41152.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 41152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044179.7 ENSMUSP00000046203.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044179.7Link to Ensembl Protein Viewer:ENSMUSP00000046203.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044179Re-query CCDS DB by Protein ID:ENSMUSP00000046203
Original member NCBI NM_031381.2 NP_113558.1 Updated not alive Link to Nucleotide Sequence:NM_031381.2Link to Protein Sequence:NP_113558.1Re-query CCDS DB by Nucleotide ID:NM_031381Re-query CCDS DB by Protein ID:NP_113558
Current member NCBI NM_031381.3 NP_113558.1 Accepted alive Link to Nucleotide Sequence:NM_031381.3Link to Protein Sequence:NP_113558.1Re-query CCDS DB by Nucleotide ID:NM_031381Re-query CCDS DB by Protein ID:NP_113558Link to BLAST:NP_113558.1

Chromosomal Locations for CCDS 41152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 140810061 140810168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140812638 140813090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGAATTGCGAGGATGTCACCACCGGGTTCCGCCATGCCAGGGTGTTAATGTTCATCAACGAACAAATGG
CCAAGCACTCCAGAGGCCCGGAGTTCTACCTCGAGAACCTGACCCTGTCCTGGGAGGAGGTGGAGGAAAA
GCTCAATGTCCTCCTGGACGGTACCGAGGTGCCTCGGGATGTTCAGGAAGCCTGTGCCTGGAGCAGCCTG
GCCCTGGGGGTTCGCTTCGCTTTCAGGCAGGGCCAGTTGCAGGGGCGCAGAGTGCAGTGGCTGCACGACT
TCGCCAGCCTGCACAGGTCAGCGGCGCATGCCCTGGCATTGGACCTGAAGAAGCTCACCGACCAGCACGA
GATAGAACGCAAGGAGGCGGCCTACCAGCTTCTTTTGGCCCACACTAAACTCGCAGAGGTGCAGAGAGAG
CGAGACCTGATGAGACTGAAGCTACTACACGCAAGATTTGCCACCCATATGAGAGTTGTGCGAGACTACA
GAGGATGCCAGCACCAGGTACAAGCAAGAATGTCTACAATTATACAGCCTCTTAACAGAAATCGTCCCTA
G

Translation (186 aa):
MNCEDVTTGFRHARVLMFINEQMAKHSRGPEFYLENLTLSWEEVEEKLNVLLDGTEVPRDVQEACAWSSL
ALGVRFAFRQGQLQGRRVQWLHDFASLHRSAAHALALDLKKLTDQHEIERKEAAYQLLLAHTKLAEVQRE
RDLMRLKLLHARFATHMRVVRDYRGCQHQVQARMSTIIQPLNRNRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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