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Report for CCDS15653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15653.1 Public Mus musculus 2 Hspa14 23 108 98 CCDS HistoryNCBI Gene:50497Re-query CCDS DB by CCDS ID:15653.1Re-query CCDS DB by GeneID:50497See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027961.11 ENSMUSP00000027961.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027961.11Link to Ensembl Protein Viewer:ENSMUSP00000027961.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027961Re-query CCDS DB by Protein ID:ENSMUSP00000027961
Original member Current member NCBI NM_015765.2 NP_056580.2 Accepted alive Link to Nucleotide Sequence:NM_015765.2Link to Protein Sequence:NP_056580.2Re-query CCDS DB by Nucleotide ID:NM_015765Re-query CCDS DB by Protein ID:NP_056580Link to BLAST:NP_056580.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056580.2 509 Q99M31-1 509 100% 0 0

Chromosomal Locations for CCDS 15653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3488991 3489069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3489698 3489768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3490937 3491110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3491521 3491733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3494498 3494600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3496564 3496719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3498022 3498183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3499207 3499311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3501048 3501138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3502494 3502599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3502737 3502785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3511015 3511097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3511174 3511254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3512634 3512690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGCGGCGATCGGCGTGCACCTGGGCTGCACATCAGCCTGTGTGGCTGTCTACAAGGATGGCCGGGCCG
ATGTGGTTGCAAATGATGCAGGGGATAGAGTCACACCAGCCATTGTTGCTTACTCGGAACGTGAACAGGT
GGTTGGACTGGCAGCAAAACAAAGTAGAATAAGACATGTTTCAAGCACAGTAGTGAAAGTGAAACAGATC
CTTGGCAGAAGCTCTGCAGATCCACAAGCTCAGAAATACATCTCAGAAAGTAAATGCTTAGTCATTGAGA
AAAATGGGAAGTTGCGGTATGAAATAGATACAGGAGAAGAAACAAAACTTGTTAATCCAGAAGATGTTGC
CAGACTGATATTCAGTAAAATGAAAGAAACAGCGCATTCTGTCCTGGGCTCAGATGCAAATGACGTGGTT
GTCACTGTCCCATTTGACTTTGGAGAAAAGCAGAAGTCTGCTCTGGGGGAGGCGGCTGGAGCTGCTGGAT
TTAACGTGCTGCGGCTGATCCATGAGCCGTCTGCAGCTCTCCTTGCTTATGGGATTGGACAAGACCACCC
TACCGGGAAGAGCAATGTTTTGGTGTTTAAGCTTGGAGGAACGTCCTTATCGCTCAGTGTCATGGAAGTT
AACAGTGGGATGTATCGGGTCCTTTCCACAAACACCAGTGACAACATAGGGGGCGCACATTTCACAGACA
CCTTAGCACAGTACCTGGCTTCGGAGTTCCAGAGGTTGTTCAAACATGATGTGAGAGGAAATGCCCGAGC
CATGATGAAATTGATGAACAGCGCTGAAGTGGCCAAGCATTCTCTGTCAACCTTGGGAAGTGCCAACTGC
TTTGTAGATTCCTTGTATGAAGGTCAAGACTTTGATTGCAATGTGTCCAGAGCAAGATTTGAGCTGCTCT
GTTCTCCGCTTTTTAACAAATGTACAGAAGCAATCCGGGAGCTCTTGCGCCAGACTGGATTCACAGCAGA
TGATATCAACAAGGTTGTGCTGTGTGGTGGATCTTCCAGAATCCCAAAGCTGCAGCAGCTGATTAAAGAT
CTCTTCCCAGCCGTGGACCTCCTCAACTCTATCCCTCCAGATGAGGTCATCCCTATTGGTGCAGCCATAG
AAGCCGGGATTCTTGTTGGGAAAGAGAGCACGTCAGGAGATGACTCTGTCATGATAGAGTGTTCAGCCAA
GGATATTTTAGTTAAGGGAGTGGATGAGTCAGGTGCCGACAGATTCACAGTACTGTTTCCCTCTGGGACC
CCGCTGCCAGCCCGAAGACAGCACACACTGCAGGCCCCCGGGAGGGTGTCTTCCGTTTGCCTTGAACTCT
ATGAGTCTGAGGGGAAGAACTCTGCTAAAGAGGAGGCCAAGTTTGCACAGGTTGTACTCCAGGACTTAGA
TAAAAAAGAAAATGGATTGCGTGATATATTAGCTGTTCTTACTATGAAAAGGGATGGATCTTTACAGGTG
ACGTGCACAGACCAAGACACCGGCAAGTGTGAGGCCATTACTGTTGAGGTTGCATCCTGA

Translation (509 aa):
MAAIGVHLGCTSACVAVYKDGRADVVANDAGDRVTPAIVAYSEREQVVGLAAKQSRIRHVSSTVVKVKQI
LGRSSADPQAQKYISESKCLVIEKNGKLRYEIDTGEETKLVNPEDVARLIFSKMKETAHSVLGSDANDVV
VTVPFDFGEKQKSALGEAAGAAGFNVLRLIHEPSAALLAYGIGQDHPTGKSNVLVFKLGGTSLSLSVMEV
NSGMYRVLSTNTSDNIGGAHFTDTLAQYLASEFQRLFKHDVRGNARAMMKLMNSAEVAKHSLSTLGSANC
FVDSLYEGQDFDCNVSRARFELLCSPLFNKCTEAIRELLRQTGFTADDINKVVLCGGSSRIPKLQQLIKD
LFPAVDLLNSIPPDEVIPIGAAIEAGILVGKESTSGDDSVMIECSAKDILVKGVDESGADRFTVLFPSGT
PLPARRQHTLQAPGRVSSVCLELYESEGKNSAKEEAKFAQVVLQDLDKKENGLRDILAVLTMKRDGSLQV
TCTDQDTGKCEAITVEVAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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