NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12489.1 Public Homo sapiens 19 CAPNS1 24 110 108 CCDS HistoryNCBI Gene:826Re-query CCDS DB by CCDS ID:12489.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12489.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246533.8 ENSP00000246533.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246533.8Link to Ensembl Protein Viewer:ENSP00000246533.2Re-query CCDS DB by Nucleotide ID:ENST00000246533Re-query CCDS DB by Protein ID:ENSP00000246533
Original member Current member EBI ENST00000588815.5 ENSP00000464849.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588815.5Link to Ensembl Protein Viewer:ENSP00000464849.1Re-query CCDS DB by Nucleotide ID:ENST00000588815Re-query CCDS DB by Protein ID:ENSP00000464849
Original member Current member NCBI NM_001003962.3 NP_001003962.1 Accepted alive Link to Nucleotide Sequence:NM_001003962.3Link to Protein Sequence:NP_001003962.1Re-query CCDS DB by Nucleotide ID:NM_001003962Re-query CCDS DB by Protein ID:NP_001003962Link to BLAST:NP_001003962.1
Original member Current member NCBI NM_001302632.2 NP_001289561.1 Accepted alive Link to Nucleotide Sequence:NM_001302632.2Link to Protein Sequence:NP_001289561.1Re-query CCDS DB by Nucleotide ID:NM_001302632Re-query CCDS DB by Protein ID:NP_001289561Link to BLAST:NP_001289561.1
Original member Current member NCBI NM_001749.4 NP_001740.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001749.4Link to Protein Sequence:NP_001740.1Re-query CCDS DB by Nucleotide ID:NM_001749Re-query CCDS DB by Protein ID:NP_001740Link to BLAST:NP_001740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003962.1 268 P04632 268 100% 0 0
NP_001289561.1 268 P04632 268 100% 0 0
NP_001740.1 268 P04632 268 100% 0 0

Chromosomal Locations for CCDS 12489.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36141012 36141220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36142300 36142333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36142652 36142741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36142909 36142966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36143064 36143128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36145806 36145874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36145976 36146054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36146196 36146312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36149578 36149636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36149813 36149839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGTTCCTGGTTAACTCGTTCTTGAAGGGCGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGGTGGGG
GCCTGGGAAATGTGCTTGGAGGCCTGATCAGCGGGGCCGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGTGGTGGAGGCGGCGGTGGCGGTGGAACGGCCATGCGCATCCTAGGCGGAGTCATCAGCGCCATCAGC
GAGGCGGCTGCGCAGTACAACCCGGAGCCCCCGCCCCCACGCACACATTACTCCAACATTGAGGCCAACG
AGAGTGAGGAGGTCCGGCAGTTCCGGAGACTCTTTGCCCAGCTGGCTGGAGATGACATGGAGGTCAGCGC
CACAGAACTCATGAACATTCTCAATAAGGTTGTGACACGACACCCTGATCTGAAGACTGATGGTTTTGGC
ATTGACACATGTCGCAGCATGGTGGCCGTGATGGATAGCGACACCACAGGCAAGCTGGGCTTTGAGGAAT
TCAAGTACTTGTGGAACAACATCAAAAGGTGGCAGGCCATATACAAACAGTTCGACACTGACCGATCAGG
GACCATTTGCAGTAGTGAACTCCCAGGTGCCTTTGAGGCAGCAGGGTTCCACCTGAATGAGCATCTCTAT
AACATGATCATCCGACGCTACTCAGATGAAAGTGGGAACATGGATTTTGACAACTTCATCAGCTGCTTGG
TCAGGCTGGACGCCATGTTCCGTGCCTTCAAATCTCTTGACAAAGATGGCACTGGACAAATCCAGGTGAA
CATCCAGGAGTGGCTGCAGCTGACTATGTATTCCTGA

Translation (268 aa):
MFLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMRILGGVISAIS
EAAAQYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFG
IDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLY
NMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH