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Report for CCDS38770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38770.1 Public Mus musculus 4 Musk 23 108 98 CCDS HistoryNCBI Gene:18198Re-query CCDS DB by CCDS ID:38770.1Re-query CCDS DB by GeneID:18198See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177951.7 ENSMUSP00000136696.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177951.7Link to Ensembl Protein Viewer:ENSMUSP00000136696.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177951Re-query CCDS DB by Protein ID:ENSMUSP00000136696
Original member Current member NCBI NM_001037129.1 NP_001032206.1 Accepted alive Link to Nucleotide Sequence:NM_001037129.1Link to Protein Sequence:NP_001032206.1Re-query CCDS DB by Nucleotide ID:NM_001037129Re-query CCDS DB by Protein ID:NP_001032206Link to BLAST:NP_001032206.1

Chromosomal Locations for CCDS 38770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 58286112 58286190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58293492 58293618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58296608 58296759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58301602 58301729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58303845 58303986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58327326 58327355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58333565 58333689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58344152 58344311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58347853 58347859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58353944 58354207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58355681 58355856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58366798 58366996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58367397 58367588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58368873 58369021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58373031 58373713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGAGAGAGCTTGTCAACATTCCACTGTTACAGATGCTCACCCTGGTTGCCTTCAGCGGGACTGAGAAAC
TTCCAAAAGCCCCTGTCATCACCACGCCTCTTGAAACTGTAGATGCCTTGGTTGAAGAAGTAGCGACTTT
CATGTGTGCCGTGGAATCCTACCCTCAGCCCGAGATTTCTTGGACCAGAAATAAAATTCTCATTAAGCTG
TTTGACACCCGCTACAGCATCCGGGAGAATGGTCAGCTCCTCACCATTCTGAGCGTGGAAGACAGTGATG
ATGGCATCTACTGCTGCATAGCCAACAATGGAGTGGGAGGAGCCGTGGAGAGTTGTGGTGCCCTGCAAGT
GAAGATGAAACCTAAAATAACTCGTCCTCCCATTAATGTAAAAATAATAGAGGGATTGAAGGCAGTTCTG
CCGTGCACTACGATGGGTAACCCCAAACCATCTGTGTCCTGGATCAAGGGGGACAATGCTCTCAGGGAAA
ATTCCAGAATCGCAGTTCTTGAATCTGGGAGCTTAAGGATCCATAATGTGCAAAAGGAAGATGCAGGACA
GTACCGCTGTGTGGCCAAAAACAGCCTGGGCACAGCTTACTCCAAACTGGTGAAGCTGGAAGTGGAGGAA
GACAGAGAACCTGAGCAGGACGCTAAAGTTTTTGCAAGAATCCTGCGTGCTCCTGAATCCCACAATGTCA
CCTTTGGTTCCTTTGTAACCCTACGCTGCACAGCAATAGGCATCCCTGTCCCCACCATCAGCTGGATTGA
AAACGGAAATGCTGTTTCTTCAGGTTCCATTCAAGAGAGTGTGAAAGACCGAGTGATTGACTCAAGACTC
CAGCTCTTCATCACAAAGCCAGGACTCTACACATGCATAGCTACCAATAAGCACGGAGAAAAGTTCAGTA
CCGCAAAGGCTGCAGCCACTGTCAGCATAGCAGAATGGAGTAAGTCACAGAAAGACAGCCAAGGCTACTG
TGCCCAGTACAGAGGGGAGGTGTGTGATGCAGTCCTGGCGAAAGATGCTCTTGTCTTCTTCAACACCTCC
TACCGGGACCCCGAGGACGCCCAGGAGCTGCTGATCCACACTGCGTGGAATGAGCTGAAGGCTGTGAGTC
CACTGTGCCGGCCAGCTGCTGAGGCTCTGCTGTGTAACCACCTCTTCCAAGAGTGCAGCCCTGGAGTGGT
ACCTACTCCCATGCCCATTTGCAGAGAGTACTGCCTGGCGGTAAAGGAGCTCTTCTGTGCAAAGGAATGG
CAGGCAATGGAAGGAAAGGCCCACCGGGGCCTCTACAGATCTGGGATGCATCTCCTTCCGGTACCAGAGT
GCAGCAAGCTTCCCAGCATGCACCGGGACCCCACAGCCTGCACAAGACTGCCATATTTAGCATTCCCGTC
AATAACGTCCTCCAGGCCGAGCGCGGACATTCCAAACCTGCCTGCCTCCACCTCTTCCTTTGCCGTCTCG
CCTGCGTACTCCATGACCGTCATCATCTCCATCGTGTCCAGCTTTGCCCTGTTTGCTCTTCTCACCATCG
CTACTCTCTATTGCTGCCGAAGGAGGAAAGAATGGAAAAATAAGAAAAGAGAGTCGACCGCGGTGACCCT
CACCACGTTGCCTTCCGAGCTCCTGCTGGATAGGCTCCATCCCAACCCCATGTACCAGAGGATGCCACTC
CTTCTGAATCCTAAGTTGCTCAGCCTGGAGTATCCGAGGAATAACATTGAGTATGTCCGAGACATCGGAG
AGGGGGCGTTTGGAAGAGTCTTCCAAGCAAGGGCCCCTGGCTTGCTGCCTTATGAACCTTTCACTATGGT
GGCCGTGAAGATGCTTAAGGAAGAGGCCTCTGCAGACATGCAAGCGGACTTTCAGAGGGAGGCGGCCCTC
ATGGCAGAGTTTGACAACCCCAACATTGTGAAACTCTTAGGTGTGTGTGCCGTTGGGAAGCCGATGTGTC
TGCTCTTTGAATATATGGCCTATGGTGACCTCAATGAGTTCCTCCGAAGTATGTCCCCGCACACTGTTTG
CAGCCTCAGCCACAGTGACCTGTCCACGAGGGCTCGGGTGTCTAGCCCTGGTCCTCCACCACTGTCCTGT
GCAGAACAGCTCTGCATTGCCAGGCAGGTGGCAGCTGGCATGGCCTACCTTTCAGAGCGCAAGTTTGTCC
ACCGGGACTTAGCTACCAGGAACTGCCTGGTTGGGGAGACCATGGTGGTGAAAATTGCAGACTTTGGCCT
CTCCAGGAACATCTATTCCGCAGACTACTACAAAGCTGATGGAAATGACGCCATCCCTATCCGCTGGATG
CCGCCCGAGTCTATCTTCTACAACCGCTACACCACTGAGTCGGATGTATGGGCCTATGGTGTGGTCCTCT
GGGAGATCTTCTCCTATGGGCTGCAGCCCTACTATGGAATGGCCCACGAGGAGGTCATTTACTATGTGAG
AGATGGCAACATCCTCGCCTGCCCTGAGAACTGCCCCTTGGAACTGTACAACCTCATGCGCCTGTGTTGG
AGCAAGCTGCCTGCTGATAGACCCAGCTTCTGCAGTATCCACAGGATCCTGCAGCGCATGTGCGAGAGAG
CAGAGGGAACGGTGGGTGTCTAA

Translation (870 aa):
MRELVNIPLLQMLTLVAFSGTEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKL
FDTRYSIRENGQLLTILSVEDSDDGIYCCIANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVL
PCTTMGNPKPSVSWIKGDNALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEE
DREPEQDAKVFARILRAPESHNVTFGSFVTLRCTAIGIPVPTISWIENGNAVSSGSIQESVKDRVIDSRL
QLFITKPGLYTCIATNKHGEKFSTAKAAATVSIAEWSKSQKDSQGYCAQYRGEVCDAVLAKDALVFFNTS
YRDPEDAQELLIHTAWNELKAVSPLCRPAAEALLCNHLFQECSPGVVPTPMPICREYCLAVKELFCAKEW
QAMEGKAHRGLYRSGMHLLPVPECSKLPSMHRDPTACTRLPYLAFPSITSSRPSADIPNLPASTSSFAVS
PAYSMTVIISIVSSFALFALLTIATLYCCRRRKEWKNKKRESTAVTLTTLPSELLLDRLHPNPMYQRMPL
LLNPKLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL
MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSC
AEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGETMVVKIADFGLSRNIYSADYYKADGNDAIPIRWM
PPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLMRLCW
SKLPADRPSFCSIHRILQRMCERAEGTVGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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