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Report for CCDS38490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38490.1 Public Mus musculus 3 Dcst1 23 108 98 CCDS HistoryNCBI Gene:77772Re-query CCDS DB by CCDS ID:38490.1Re-query CCDS DB by GeneID:77772See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070820.6 ENSMUSP00000065502.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070820.6Link to Ensembl Protein Viewer:ENSMUSP00000065502.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070820Re-query CCDS DB by Protein ID:ENSMUSP00000065502
Original member Current member NCBI NM_029974.2 NP_084250.1 Accepted alive Link to Nucleotide Sequence:NM_029974.2Link to Protein Sequence:NP_084250.1Re-query CCDS DB by Nucleotide ID:NM_029974Re-query CCDS DB by Protein ID:NP_084250Link to BLAST:NP_084250.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084250.1 732 Q059Y8 732 100% 0 0

Chromosomal Locations for CCDS 38490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89350263 89350514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89352467 89352580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89352703 89352845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89353266 89353382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89353515 89353641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89353798 89353893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89354091 89354190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89356237 89356397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89356818 89356939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89357473 89357616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89357719 89357926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89358562 89358701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89359075 89359203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89364049 89364123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89364204 89364329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89365010 89365154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGGCGTTCCTCTCATCAACACTTCACAGCCTAGGGATCTTTGAAAAGATTTCCAGGATAAAAGAGGTTC
TCAAGAATAGGCTGCTGGACCTTACAAAGCGTCGGGACCAAGCACGGGAGCAACAAAGGAAACGGCCCCA
CACCATCATACAGGGGCTGCTCCTCTGGAGTCTTCCAGTTTCCTGGATCCGGTTCCTGTGGCGACAGCCA
GGGGAGTTTCCAGTAACTGCTTTCCTGCTAGGAGCAGGCACTGGTGGGCTCCTGGCCATAGGTCTCTTTC
AGCTCTTGGTGAATCCCATGAACATTTATGAGGAGCAGAAGGTGGTGGCGTTATACTGCTTGGCAAGCTT
GGGGGCCATCGGCTGGGGCACCTCCCCTCACATCCGCTGTGCCAGTCTCCTGTTGGTACCCAAGATGCTG
GGCAAAGAAGGCAGACTCTTTGTCATGGGATATGCTTTGGCTGCTATCTACAGTGGGCCGGCGGCCAATC
TAAGGTCCAACATCAACGAGGTGATAGCATCCCTGGGCTGCACTGTGGAGCTGCAGATCAACAACACCCG
ATCCGCCTGGCGAGTCTCCACAGCCCCTCTGCGGGCAGTGTTCAAGGGCATGGTGGGCAGCAAAGATTCA
TTGAATAAAGAGATTCAGAACGTCTCTACCTCCTTTGAAGAGATGGATGAACAGGTGAAGAGTGATGCTG
GCTACTCATCTGAGGACTGGGACAAGAACAGAGAAAGCACAGAGATGTTCGGAACCTCCCGCGTCCGACC
CTACCTGTCCACACAGATGGTGTATGAGCTGAGGACCAGGCTACGCTGCATCCATGTAGTAAATAAGGCC
ATACTCAGCTGCTACCGCTGGTTTGATAAAAAGCATAAAAACTGCATGCGACGCATCCACCTCCCACTCT
TCAACAACATGATCTGTGTGCCAATGAAGTTCAAGTTCCTCTGTAACATTGCCAAGGTGATAGAGATCTG
GTGTTACAAACGCATCCCCGTGGAAGGCAACTTTGGGCAAACCTATGACTCGGTCAACCAGTCTATCCAT
GGACTGTCTGGAGAATTTTCAGCCAATATTAACCTTAAGGAAGAGAAGCAGTCTTCAATGGTGGGTCTCA
ACACCACGAACTGGGAGCACATGGGCACCGAGGTGCGGGACTATGTTCGCCAGCAGGAGACCTATCTGCA
GTGGGCTATGGGGCTGCTGCACGTGCTTCTGTCCTGCACGTTCCTGCTGGTCTTCCATTCAGCCTTCTCC
TACATGGACCACTACAACTGGGACATCCGCTTTGACAACATCTACATCAGCACCTACTTCTGTCAGATTG
ATGCACGCAGGAAGAAGCTGGGCAAACAGAGTCTGTTGCCACTCCGCAAGGCAGAAAGGAAAACGGTTAT
CTTCCCTTTCAAAGCTACTATCCAGGCCTGGGAAATGCGCTATGTGATAAGAGAGCTCCTAGAGACTCTG
CCTATTGTGCTGCTGCTCCTGGTGCTGTGCGCGATCGACTGGGCACTCTACTCTGTCTTTGACACCATCC
GCCAGCACTCTTTCGTGCAGTATTCCTTTCGAAGCAGTCACAAGCTGGAGATAAAAGTCGAGGGAGATTC
CATACTCGCCAAGCTTCTTCGTAAAACCATCGGCGCTCTGAACACCTCCTCGAGTACAGATGTGGAAACA
AACAACATGCCCTGCCTGCCCCAACCCATTAGCCTGAATGCCAGGGATTACTTCAAGGCCTCACTGCCAA
CCCTCCTGCTTGTGTGTCTCTGCCTAGCTCAGGCCTTTGGCTACCGACTCCGGAGAGTCATCGCAGCCTT
CTATTTCCCCAAGCGAGAGAAGAAGCGGGCTCTGTTCTTCTACAATGAGTTCCTGAAGAAGAGATCAGCT
TTCACTAAACTGAGGAGGGCCGCCATTGTTCGGAGGGCAAATCAGCAGAAGGCTCCACCCCACTACCTGG
TGGAGGCTCTGTATCGCCGGTGCCCTCTCCTGCACCGCTTCATGCGTCAGCGCTGTGTGGTGTGCCAGGC
AATGGAGACGCCGGATTCCTACGTGTGCCCCACACCAGACTGCAAGGCCCTGTACTGCCGGTCGTGCTGG
GACGACATGCAACGGCTCTGCCCGGTGTGCACGCCCCGCGAAGAGCTCTCGTCATCCGCCCACAGCGACA
GCAACGACGACGCTGTGTATGGCGATTGA

Translation (732 aa):
MAFLSSTLHSLGIFEKISRIKEVLKNRLLDLTKRRDQAREQQRKRPHTIIQGLLLWSLPVSWIRFLWRQP
GEFPVTAFLLGAGTGGLLAIGLFQLLVNPMNIYEEQKVVALYCLASLGAIGWGTSPHIRCASLLLVPKML
GKEGRLFVMGYALAAIYSGPAANLRSNINEVIASLGCTVELQINNTRSAWRVSTAPLRAVFKGMVGSKDS
LNKEIQNVSTSFEEMDEQVKSDAGYSSEDWDKNRESTEMFGTSRVRPYLSTQMVYELRTRLRCIHVVNKA
ILSCYRWFDKKHKNCMRRIHLPLFNNMICVPMKFKFLCNIAKVIEIWCYKRIPVEGNFGQTYDSVNQSIH
GLSGEFSANINLKEEKQSSMVGLNTTNWEHMGTEVRDYVRQQETYLQWAMGLLHVLLSCTFLLVFHSAFS
YMDHYNWDIRFDNIYISTYFCQIDARRKKLGKQSLLPLRKAERKTVIFPFKATIQAWEMRYVIRELLETL
PIVLLLLVLCAIDWALYSVFDTIRQHSFVQYSFRSSHKLEIKVEGDSILAKLLRKTIGALNTSSSTDVET
NNMPCLPQPISLNARDYFKASLPTLLLVCLCLAQAFGYRLRRVIAAFYFPKREKKRALFFYNEFLKKRSA
FTKLRRAAIVRRANQQKAPPHYLVEALYRRCPLLHRFMRQRCVVCQAMETPDSYVCPTPDCKALYCRSCW
DDMQRLCPVCTPREELSSSAHSDSNDDAVYGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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