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Report for CCDS3445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3445.1 Public Homo sapiens 4 TLR10 24 110 108 CCDS HistoryNCBI Gene:81793Re-query CCDS DB by CCDS ID:3445.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308973.9 ENSP00000308925.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308973.9Link to Ensembl Protein Viewer:ENSP00000308925.4Re-query CCDS DB by Nucleotide ID:ENST00000308973Re-query CCDS DB by Protein ID:ENSP00000308925
Original member Current member EBI ENST00000361424.6 ENSP00000354459.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361424.6Link to Ensembl Protein Viewer:ENSP00000354459.2Re-query CCDS DB by Nucleotide ID:ENST00000361424Re-query CCDS DB by Protein ID:ENSP00000354459
Original member Current member EBI ENST00000506111.1 ENSP00000421483.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506111.1Link to Ensembl Protein Viewer:ENSP00000421483.1Re-query CCDS DB by Nucleotide ID:ENST00000506111Re-query CCDS DB by Protein ID:ENSP00000421483
Original member Current member EBI ENST00000508334.1 ENSP00000424923.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508334.1Link to Ensembl Protein Viewer:ENSP00000424923.1Re-query CCDS DB by Nucleotide ID:ENST00000508334Re-query CCDS DB by Protein ID:ENSP00000424923
Original member Current member EBI ENST00000613579.4 ENSP00000478206.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613579.4Link to Ensembl Protein Viewer:ENSP00000478206.1Re-query CCDS DB by Nucleotide ID:ENST00000613579Re-query CCDS DB by Protein ID:ENSP00000478206
Original member Current member EBI ENST00000622002.4 ENSP00000478985.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622002.4Link to Ensembl Protein Viewer:ENSP00000478985.1Re-query CCDS DB by Nucleotide ID:ENST00000622002Re-query CCDS DB by Protein ID:ENSP00000478985
Original member Current member NCBI NM_001017388.3 NP_001017388.1 Accepted alive Link to Nucleotide Sequence:NM_001017388.3Link to Protein Sequence:NP_001017388.1Re-query CCDS DB by Nucleotide ID:NM_001017388Re-query CCDS DB by Protein ID:NP_001017388Link to BLAST:NP_001017388.1
Original member Current member NCBI NM_001195106.2 NP_001182035.1 Accepted alive Link to Nucleotide Sequence:NM_001195106.2Link to Protein Sequence:NP_001182035.1Re-query CCDS DB by Nucleotide ID:NM_001195106Re-query CCDS DB by Protein ID:NP_001182035Link to BLAST:NP_001182035.1
Original member Current member NCBI NM_001195107.2 NP_001182036.1 Accepted alive Link to Nucleotide Sequence:NM_001195107.2Link to Protein Sequence:NP_001182036.1Re-query CCDS DB by Nucleotide ID:NM_001195107Re-query CCDS DB by Protein ID:NP_001182036Link to BLAST:NP_001182036.1
Original member Current member NCBI NM_030956.4 NP_112218.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030956.4Link to Protein Sequence:NP_112218.2Re-query CCDS DB by Nucleotide ID:NM_030956Re-query CCDS DB by Protein ID:NP_112218Link to BLAST:NP_112218.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017388.1 811 Q9BXR5 811 100% 0 0
NP_001182035.1 811 Q9BXR5 811 100% 0 0
NP_001182036.1 811 Q9BXR5 811 100% 0 0
NP_112218.2 811 Q9BXR5 811 100% 0 0

Chromosomal Locations for CCDS 3445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 38773155 38775590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2436 nt):
ATGAGACTCATCAGAAACATTTACATATTTTGTAGTATTGTTATGACAGCAGAGGGTGATGCTCCAGAGC
TGCCAGAAGAAAGGGAACTGATGACCAACTGCTCCAACATGTCTCTAAGAAAGGTTCCCGCAGACTTGAC
CCCAGCCACAACGACACTGGATTTATCCTATAACCTCCTTTTTCAACTCCAGAGTTCAGATTTTCATTCT
GTCTCCAAACTGAGAGTTTTGATTCTATGCCATAACAGAATTCAACAGCTGGATCTCAAAACCTTTGAAT
TCAACAAGGAGTTAAGATATTTAGATTTGTCTAATAACAGACTGAAGAGTGTAACTTGGTATTTACTGGC
AGGTCTCAGGTATTTAGATCTTTCTTTTAATGACTTTGACACCATGCCTATCTGTGAGGAAGCTGGCAAC
ATGTCACACCTGGAAATCCTAGGTTTGAGTGGGGCAAAAATACAAAAATCAGATTTCCAGAAAATTGCTC
ATCTGCATCTAAATACTGTCTTCTTAGGATTCAGAACTCTTCCTCATTATGAAGAAGGTAGCCTGCCCAT
CTTAAACACAACAAAACTGCACATTGTTTTACCAATGGACACAAATTTCTGGGTTCTTTTGCGTGATGGA
ATCAAGACTTCAAAAATATTAGAAATGACAAATATAGATGGCAAAAGCCAATTTGTAAGTTATGAAATGC
AACGAAATCTTAGTTTAGAAAATGCTAAGACATCGGTTCTATTGCTTAATAAAGTTGATTTACTCTGGGA
CGACCTTTTCCTTATCTTACAATTTGTTTGGCATACATCAGTGGAACACTTTCAGATCCGAAATGTGACT
TTTGGTGGTAAGGCTTATCTTGACCACAATTCATTTGACTACTCAAATACTGTAATGAGAACTATAAAAT
TGGAGCATGTACATTTCAGAGTGTTTTACATTCAACAGGATAAAATCTATTTGCTTTTGACCAAAATGGA
CATAGAAAACCTGACAATATCAAATGCACAAATGCCACACATGCTTTTCCCGAATTATCCTACGAAATTC
CAATATTTAAATTTTGCCAATAATATCTTAACAGACGAGTTGTTTAAAAGAACTATCCAACTGCCTCACT
TGAAAACTCTCATTTTGAATGGCAATAAACTGGAGACACTTTCTTTAGTAAGTTGCTTTGCTAACAACAC
ACCCTTGGAACACTTGGATCTGAGTCAAAATCTATTACAACATAAAAATGATGAAAATTGCTCATGGCCA
GAAACTGTGGTCAATATGAATCTGTCATACAATAAATTGTCTGATTCTGTCTTCAGGTGCTTGCCCAAAA
GTATTCAAATACTTGACCTAAATAATAACCAAATCCAAACTGTACCTAAAGAGACTATTCATCTGATGGC
CTTACGAGAACTAAATATTGCATTTAATTTTCTAACTGATCTCCCTGGATGCAGTCATTTCAGTAGACTT
TCAGTTCTGAACATTGAAATGAACTTCATTCTCAGCCCATCTCTGGATTTTGTTCAGAGCTGCCAGGAAG
TTAAAACTCTAAATGCGGGAAGAAATCCATTCCGGTGTACCTGTGAATTAAAAAATTTCATTCAGCTTGA
AACATATTCAGAGGTCATGATGGTTGGATGGTCAGATTCATACACCTGTGAATACCCTTTAAACCTAAGG
GGAACTAGGTTAAAAGACGTTCATCTCCACGAATTATCTTGCAACACAGCTCTGTTGATTGTCACCATTG
TGGTTATTATGCTAGTTCTGGGGTTGGCTGTGGCCTTCTGCTGTCTCCACTTTGATCTGCCCTGGTATCT
CAGGATGCTAGGTCAATGCACACAAACATGGCACAGGGTTAGGAAAACAACCCAAGAACAACTCAAGAGA
AATGTCCGATTCCACGCATTTATTTCATACAGTGAACATGATTCTCTGTGGGTGAAGAATGAATTGATCC
CCAATCTAGAGAAGGAAGATGGTTCTATCTTGATTTGCCTTTATGAAAGCTACTTTGACCCTGGCAAAAG
CATTAGTGAAAATATTGTAAGCTTCATTGAGAAAAGCTATAAGTCCATCTTTGTTTTGTCTCCCAACTTT
GTCCAGAATGAGTGGTGCCATTATGAATTCTACTTTGCCCACCACAATCTCTTCCATGAAAATTCTGATC
ATATAATTCTTATCTTACTGGAACCCATTCCATTCTATTGCATTCCCACCAGGTATCATAAACTGAAAGC
TCTCCTGGAAAAAAAAGCATACTTGGAATGGCCCAAGGATAGGCGTAAATGTGGGCTTTTCTGGGCAAAC
CTTCGAGCTGCTATTAATGTTAATGTATTAGCCACCAGAGAAATGTATGAACTGCAGACATTCACAGAGT
TAAATGAAGAGTCTCGAGGTTCTACAATCTCTCTGATGAGAACAGATTGTCTATAA

Translation (811 aa):
MRLIRNIYIFCSIVMTAEGDAPELPEERELMTNCSNMSLRKVPADLTPATTTLDLSYNLLFQLQSSDFHS
VSKLRVLILCHNRIQQLDLKTFEFNKELRYLDLSNNRLKSVTWYLLAGLRYLDLSFNDFDTMPICEEAGN
MSHLEILGLSGAKIQKSDFQKIAHLHLNTVFLGFRTLPHYEEGSLPILNTTKLHIVLPMDTNFWVLLRDG
IKTSKILEMTNIDGKSQFVSYEMQRNLSLENAKTSVLLLNKVDLLWDDLFLILQFVWHTSVEHFQIRNVT
FGGKAYLDHNSFDYSNTVMRTIKLEHVHFRVFYIQQDKIYLLLTKMDIENLTISNAQMPHMLFPNYPTKF
QYLNFANNILTDELFKRTIQLPHLKTLILNGNKLETLSLVSCFANNTPLEHLDLSQNLLQHKNDENCSWP
ETVVNMNLSYNKLSDSVFRCLPKSIQILDLNNNQIQTVPKETIHLMALRELNIAFNFLTDLPGCSHFSRL
SVLNIEMNFILSPSLDFVQSCQEVKTLNAGRNPFRCTCELKNFIQLETYSEVMMVGWSDSYTCEYPLNLR
GTRLKDVHLHELSCNTALLIVTIVVIMLVLGLAVAFCCLHFDLPWYLRMLGQCTQTWHRVRKTTQEQLKR
NVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNF
VQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEWPKDRRKCGLFWAN
LRAAINVNVLATREMYELQTFTELNEESRGSTISLMRTDCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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