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Report for CCDS30516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30516.1 Public Mus musculus X Siah1b 23 108 98 CCDS HistoryNCBI Gene:20438Re-query CCDS DB by CCDS ID:30516.1Re-query CCDS DB by GeneID:20438See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037928.8 ENSMUSP00000043215.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037928.8Link to Ensembl Protein Viewer:ENSMUSP00000043215.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000037928Re-query CCDS DB by Protein ID:ENSMUSP00000043215
Original member Current member EBI ENSMUST00000071667.8 ENSMUSP00000071592.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071667.8Link to Ensembl Protein Viewer:ENSMUSP00000071592.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071667Re-query CCDS DB by Protein ID:ENSMUSP00000071592
Original member Current member NCBI NM_001308385.1 NP_001295314.1 Accepted alive Link to Nucleotide Sequence:NM_001308385.1Link to Protein Sequence:NP_001295314.1Re-query CCDS DB by Nucleotide ID:NM_001308385Re-query CCDS DB by Protein ID:NP_001295314Link to BLAST:NP_001295314.1
Original member Current member NCBI NM_001308386.1 NP_001295315.1 Accepted alive Link to Nucleotide Sequence:NM_001308386.1Link to Protein Sequence:NP_001295315.1Re-query CCDS DB by Nucleotide ID:NM_001308386Re-query CCDS DB by Protein ID:NP_001295315Link to BLAST:NP_001295315.1
Original member Current member NCBI NM_009173.2 NP_033199.1 Accepted alive Link to Nucleotide Sequence:NM_009173.2Link to Protein Sequence:NP_033199.1Re-query CCDS DB by Nucleotide ID:NM_009173Re-query CCDS DB by Protein ID:NP_033199Link to BLAST:NP_033199.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295314.1 282 Q06985 282 99.6454% 0 1
NP_001295315.1 282 Q06985 282 99.6454% 0 1
NP_033199.1 282 Q06985 282 99.6454% 0 1

Chromosomal Locations for CCDS 30516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 164071234 164072082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAGCCGTCAGGCTGCTACAGCATTATCCACTGGCACCTCAAAGTGTCCACCATCCCAGAGGGTACCTG
CCTTGACTGACACAACTGCATCCAACAATGACTTGGCGAGTCTTTTTGAGTGTCCTGTCTGCTTTGACTA
TGTGTTGCCACCTATTCTTCAGTGTCAGAGTGGCCATCTTGTTTGTAGCAACTGTCGCCCCAAACTTACA
TGTTGTCCCACCTGCCGGGGCCCATTGGGATCCATTCGCAACTTGGCTATGGAGAAAGTGGCCAACTCAG
TACTCTTCCCCTGTAAATATTCCGCTTCTGGATGTGAAATAACTCTGCCACACACCAAAAAGGCAGAGCA
CGAGGAGCTGTGTGAGTTCAGGCCTTACTCCTGCCCCTGCCCTGGTGCTTCCTGTAAATGGCAAGGCTCC
TTGGATGCTGTCATGCCCCACCTGATGCATCAGCACAAGTCCATTACCACCCTGCAAGGAGAAGACATAG
TTTTCCTTGCTACAGACATCAACCTTCCTGGTGCTGTTGACTGGGTGATGATGCAGTCTTGTTTTGGCTT
TCATTTCATGTTAGTCTTGGAGAAACAGGAAAAATATGATGGTCATCAGCAGTTCTTTGCAATTGTACAA
CTGATAGGAACACGCAAACAAGCTGAAAATTTTGCCTATCGACTTGAGCTAAATGGTCATAGGCGCCGAT
TAACTTGGGAAGCGACTCCTCGATCTATTCATGAGGGGATTGCAACAGCCATTATGAATAGTGATTGCCT
AGTGTTTGACACCAGCATTGCACAGCTTTTTGCAGAAAATGGTAATCTAGGCATCAATGTAACTATTTCC
ATGTGTTGA

Translation (282 aa):
MSRQAATALSTGTSKCPPSQRVPALTDTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLT
CCPTCRGPLGSIRNLAMEKVANSVLFPCKYSASGCEITLPHTKKAEHEELCEFRPYSCPCPGASCKWQGS
LDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ
LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS
MC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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