NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40759.1 Public Mus musculus 9 Rad54l2 23 108 98 CCDS HistoryNCBI Gene:81000Re-query CCDS DB by CCDS ID:40759.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40759.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046502.6 ENSMUSP00000045454.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046502.6Link to Ensembl Protein Viewer:ENSMUSP00000045454.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046502Re-query CCDS DB by Protein ID:ENSMUSP00000045454
Original member Current member NCBI NM_030730.2 NP_109655.2 Accepted alive Link to Nucleotide Sequence:NM_030730.2Link to Protein Sequence:NP_109655.2Re-query CCDS DB by Nucleotide ID:NM_030730Re-query CCDS DB by Protein ID:NP_109655Link to BLAST:NP_109655.2

Chromosomal Locations for CCDS 40759.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106692716 106693710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106695872 106695964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106698118 106698207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106700495 106700694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106702645 106702841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106703492 106703664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106704065 106704270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106705768 106705867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106708215 106708333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106710334 106710452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106710668 106710919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106712332 106712509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106713244 106713586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106716061 106716257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106717186 106717319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106717749 106717931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106718913 106719139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106719608 106719724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106720325 106720464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106722716 106722914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106753945 106754086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4404 nt):
ATGTCAGACGAATCCGCCTCAGGGAGCGATCCAGACCTGGACCCGGACGTGGAGCTGGAGGATGAGGAAG
AGGAGGAGGAGGAGGAGGAGGAGGTGGCAGTGGAGGAGCATGACAGGGATGACGAGGAAGGCCTGCTGGA
TGACACATCCCTGGAAGGCATGTGTGGCACTGAGCATGCCCAGCTGGGGGAAGATGGGCAGCGGCCGCCG
CGGTGCACTTCAACTACCTCATCTCAGTCTGAGCCTTCAGAGCAGCTTAGGCACCAAGGCAAGATCCTAG
CATCCGAGGACCCCAAAAAGAAGCGAGCTCAGAAGCCCTCTCACATGAGAAGAAACATACGAAAGCTACT
CCGGGAGGATCAGTTGGAGCCCGTAACCAAAGCAGCACAGCAGGAAGAATTGGAAAGAAGAAAGCGCCTG
GAGCAGCAGAGGAAAGAATATGCAGCCCCCATTCCTACTGTCCCTTTGGAGTTCCTACCTGAGGAAATTG
TCTTACGAGCTAGTGATGGTCCCCAACTCCCACCTCGGGTCTTAGCCCAGGAAGTCATTTGTTTGGACAG
TAGCAGTGGCAGTGAGGATGAAAAGAGTAGTCGAGACGAGGTAATTGAGCTGAGTTCTGGAGAGGAGGAT
ACGCTGCACATCGTGGACAGCAGTGAGTCTGTCAGCGAGGAGGACGAGGAAGAGGAGAAGGGTGGCACCC
ATGTGAATGACGCCTTAAACCAGCATGATGCTCTCGGGCGGGTCCTTGTCAACCTGAATCACCCTCCAGA
GGAGGAGAATGTCTTCCTGGCCCCCCAGTTGGCACGGGCTGTGAAACCTCATCAGATTGGTGGGATCCGG
TTCCTATATGATAACCTAGTGGAGTCCTTAGAAAGGTTTAAGACCAGTAGTGGCTTTGGCTGTATCCTGG
CCCATAGCATGGGCCTGGGGAAAACTCTGCAAGTGATCTCCTTCATTGATGTCCTTTTCCGCCATACGCC
AGCCAAAACAGTCCTTGCCATTGTGCCGGTGAACACTCTTCAGAATTGGTTGGCAGAGTTCAACATGTGG
CTCCCGGCTCCTGAAGCCCTCCCAGCCGACAGCAAGCCTGAAGAAGTCCAGCCTCGGTTCTTTAAAGTTC
ATATCTTGAATGATGAACACAAGACGGTGGCATCCCGTGCTAAAGTGACGGCTGATTGGGTTTCAGAGGG
TGGAGTGCTACTGATGGGGTATGAGATGTACAGACTACTCACACTGAAGAAGTCCTTAGCCACAAGTAGG
CCGAAGAAAACCAAGAAACGCTCTCATCCCGTCATCATTGATCTGGATGAAGAAGACCGGCAGCAGGAGT
TCCGGAGAGAGTTTGAGAAGGCCTTATGCCGCCCTGGTCCTGATGTGGTGATCTGTGACGAGGGACACCG
CATCAAAAATTGCCAAGCCAGCACCTCACAGGCTCTGAAGAACATACGTTCTCGTCGGCGGGTAGTGCTG
ACTGGCTACCCTCTACAGAACAACCTCATTGAGTACTGGTGCATGGTGGACTTTGTGCGCCCAGATTTCC
TTGGTACTCGTCAGGAGTTTAGCAACATGTTTGAACGCCCTATCCTAAACGGACAGTGTATTGACAGCAC
ACCTCAGGATGTCCGCCTCATGCGCTACCGGAGCCATGTTTTGCACAGCCTCCTGGAGGGCTTTGTGCAG
AGGAGAGGCCACACTGTGTTGAAGATTCACCTCCCTGCCAAAGAAGAGAATGTGATCCTGGTGCGGCTTT
CTCAGATCCAGCGAGATTTGTACACACAATTCATGGACCGTTTCCGGGATTGTGGTACCAGTGGCTGGTT
AGGGCTGAATCCTCTGAAGGCTTTCTGTGTATGCTGCAAGATCTGGAACCATCCTGATGTGCTGTATGAA
GCCCTTCAGAAGGAAAACCTAGCCAATGAGCAAGACCTAGATGTGGAAGAACTTGGCTCAGCGGGGACCA
GTGCCCGCTGCCCACCACATGGCACAAAAGTCAAGGGAGAAGATAGTGCCTTGCCTTCCTCAATGGGAGA
AGCAACCAACAGCAAGTTCCTACAGGGAGTTGGCTTTAACCCTTTCCAGGAACGGGGCAATAACATTGTT
ACATATGAGTGGGCCAAGGAGCTTCTGACTAATTATCAGACTGGAGTCCTGGAGAACTCTCCCAAGATGG
TACTGCTTTTCCACCTGATTGAAGAAAGCGTGAAGCTCGGGGACAAGATTCTTGTATTTAGCCAGAGCCT
TTCTACCTTGGCTCTCATCGAGGAGTTCCTAGGGAAACGAGACATGCCTTGTCTGCCTGGTGCCGAGGGG
CAAGGAACACAGAAGTGGGTTCGAAATGTCAGCTACTTCCGGCTAGATGGTAGCACCCCTGCCTTTGAGA
GGGAGCGGCTCATTAATCAGTTCAATGATCCCAGCAACCTCACCACCTGGCTGTTCCTTCTCTCCACAAG
GGCCGGATGCTTGGGGGTGAATCTGATTGGTGCCAATCGAGTGGTGGTATTCGATGCTTCCTGGAACCCT
TGCCATGATGCCCAGGCAGTATGTCGGGTATACCGTTATGGCCAGAAAAAGCCCTGTCACATCTATCGAC
TCGTGGCTGATTATACTCTTGAGAAGAAGATATATGACCGGCAGATTTCCAAGCAGGGCATGTCAGATCG
GGTAGTGGATGATCTAAATCCAATGCTGAACTTCACCCGGAAGGAAGTGGAAAACCTGCTGCACTTTGTT
GAGAAGGAGCCAGCTCCCCAAACATCTTTGGATATAAAGGGGATCAAGGAGTCAGTCTTGCAACTTGCCT
GCCTGAAGTACCCTCACCTCATCACCAAGGAGCCTTTTGAGCACGAGTCATTGCTCCTCAACCGAAAAGA
TCACAAGCTGACCAAAGCTGAGAAGAAAGCAGCAAAGAAAAGCTATGAGGAGGACAAACGCACATCAGTA
CCCTATACCCGCCCATCATATGCACAGTATTACCCTGCCAGCGACCAGAGCCTGACCAGCATCCCTGCCT
TCAGTCAGAGGAACTGGCAGCCAACACTGAAGGGTGATGAAAAGCCTGTGGCCAGCGTTCGTCCTGTACA
GTCCACCCCCATTCCCATGATGCCCCGGCATGTCCCACTCAGTGGTGGTGTAAGCTCTGCCTCCAGCACA
AATACATCCATGAACTTCCCTATCAACTACTTGCAGCGGGCAGGAGTCCTTGTGCAGAAAGTGGTTACCA
CGACAGATATTGTTATCCCTGGACTCAACAGCTCCACAGATGTTCAGGCAAGAATCAATGCTGGTGAGAG
CATCCACATCATCCGAGGGACGAAAGGGACATACATCCGCACCAGTGATGGACGCATCTTTGCTGTCCGG
GCGACCGGCAAACCAAAGGCCCCTGAAGATGGTCGGATGGCTGCCTCAGGTTCCCAGGGGCCTTCTCTTG
CGTCCACAAGCAATGGCAGACATAGTGCCTCATCACCCAAAGCCCCTGACCCCGAGGGGCTGGCCCGGCC
GGTCTCTCCTGACAGCCCAGAAATCATCAGTGAACTCCAGCAGTATGCAGATGTGGCCGCTGCTCGGGAA
TCCCGGCAGAGCTCCCCAAGCGTCAGTGCTGCCCTGCCTGGGCCCCCGGGCCAGCTTATGGACAACAGCA
CCATTCCTGGGACAGCTCTTGGAACTGAGCCATGCCTTGGGGGTCATTGCCTCAATAGTTCCCTCTTGGT
GACTGGCCAGCCCAGTGGTGGCAGGCACCCAGTGCTGGACTTAAGGGGCCATAAGCGAAAGTTGGCTACT
CCGTCTGTCACCCAGGAATCAGTCCGTCGACGGTCCAGGAAGGGCCATCTGCCAGCCCCCGTGCAGCCCT
ATGAACATGGGTATCCAGTCTCTGGCGGGTTTGCAATGCCGCCTGTCTCCTTAAATCATAACCTCACCAC
CCCCTTCACCTCCCAGGCTGGGGAGAATTCCCTATTTATGGGCAGTAATCCCTCCTACTACCAGCTGTCC
AATTTGCTGGCAGATGCCCGCCTGGTGTTTCCAGTGACTACTGACCCTCTGGTGCCAGCAGGCCCTGTCA
GTTCCTCTTCCACGGCTACCTCAGTCACTGCCAGCAACCCCTCCTTCATGCTCAACCCCTCCGTGCCAGG
GATGCTACCCAGCTATTCACTCCCATTCTCACAGCCACTCCTGTCCGAGCCCAGGATGTTTGCGCCTTTC
CCTTCCCCCGGCTTGCCCAGCAACCTTTCTCGGGGCGTGTCTGTCTACCCAGGCTATATGTCCCCACATG
CAGGCTACCCAGCTGGTGGCCTCCTCCGGTCCCAGGTGCCTCCATTTGACTCGCATGAGGTGGCGGAGGT
GGGGTTCAGCTCCAATGATGATGAGGATAAAGATGATGATGTGATAGAGGTCACTGGGAAGTAG

Translation (1467 aa):
MSDESASGSDPDLDPDVELEDEEEEEEEEEEVAVEEHDRDDEEGLLDDTSLEGMCGTEHAQLGEDGQRPP
RCTSTTSSQSEPSEQLRHQGKILASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRL
EQQRKEYAAPIPTVPLEFLPEEIVLRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEVIELSSGEED
TLHIVDSSESVSEEDEEEEKGGTHVNDALNQHDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIR
FLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW
LPAPEALPADSKPEEVQPRFFKVHILNDEHKTVASRAKVTADWVSEGGVLLMGYEMYRLLTLKKSLATSR
PKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVL
TGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQ
RRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRFRDCGTSGWLGLNPLKAFCVCCKIWNHPDVLYE
ALQKENLANEQDLDVEELGSAGTSARCPPHGTKVKGEDSALPSSMGEATNSKFLQGVGFNPFQERGNNIV
TYEWAKELLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEG
QGTQKWVRNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNP
CHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFV
EKEPAPQTSLDIKGIKESVLQLACLKYPHLITKEPFEHESLLLNRKDHKLTKAEKKAAKKSYEEDKRTSV
PYTRPSYAQYYPASDQSLTSIPAFSQRNWQPTLKGDEKPVASVRPVQSTPIPMMPRHVPLSGGVSSASST
NTSMNFPINYLQRAGVLVQKVVTTTDIVIPGLNSSTDVQARINAGESIHIIRGTKGTYIRTSDGRIFAVR
ATGKPKAPEDGRMAASGSQGPSLASTSNGRHSASSPKAPDPEGLARPVSPDSPEIISELQQYADVAAARE
SRQSSPSVSAALPGPPGQLMDNSTIPGTALGTEPCLGGHCLNSSLLVTGQPSGGRHPVLDLRGHKRKLAT
PSVTQESVRRRSRKGHLPAPVQPYEHGYPVSGGFAMPPVSLNHNLTTPFTSQAGENSLFMGSNPSYYQLS
NLLADARLVFPVTTDPLVPAGPVSSSSTATSVTASNPSFMLNPSVPGMLPSYSLPFSQPLLSEPRMFAPF
PSPGLPSNLSRGVSVYPGYMSPHAGYPAGGLLRSQVPPFDSHEVAEVGFSSNDDEDKDDDVIEVTGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH