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Report for CCDS16466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16466.1 Public Mus musculus 2 Trim44 23 108 98 CCDS HistoryNCBI Gene:80985Re-query CCDS DB by CCDS ID:16466.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16466.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102573.7 ENSMUSP00000099633.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102573.7Link to Ensembl Protein Viewer:ENSMUSP00000099633.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102573Re-query CCDS DB by Protein ID:ENSMUSP00000099633
Original member NCBI NM_020267.2 NP_064663.2 Updated not alive Link to Nucleotide Sequence:NM_020267.2Link to Protein Sequence:NP_064663.2Re-query CCDS DB by Nucleotide ID:NM_020267Re-query CCDS DB by Protein ID:NP_064663
Current member NCBI NM_020267.3 NP_064663.2 Accepted alive Link to Nucleotide Sequence:NM_020267.3Link to Protein Sequence:NP_064663.2Re-query CCDS DB by Nucleotide ID:NM_020267Re-query CCDS DB by Protein ID:NP_064663Link to BLAST:NP_064663.2

Chromosomal Locations for CCDS 16466.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 102304477 102304504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102346964 102346983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102357417 102357656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102380864 102380941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102400013 102400684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGGCCTCCGGAGTGGGCGCGGCCTGCGAGGAGCTGCCTCCCGACGGCACGTGTGACGAGTGCGAACCCG
ACGAGGCGCCCGGGGCGGAGGAGGTGTGCCGCGACTGCGGCTTCTGCTACTGCCGCCGCCACGCCGACGC
GCATCGCCAGAAGTTCCTCAGCCACCGCCTGGCTGCCTACGTCCATGGCGCCCAGGCCTGGACTCCGCCG
GCCAGCGGGGGAGACGACGCGCTCCCCGAAGACGGCGAGGCCAAAGGGGAGGCCGAGGGGGAGGTAGAGA
GCGAGGTCGGGGAAGAAGAGAGCGAGACGGAGGTAGACAGTGAGTCGGAAGAAGAGAGCGAGACCGAGGA
AGACAGTGAGGATGAGAGTGACGAGGAGAGTGAAGAAGACAGCGAGGAAGAGATGGAGGATGAGCAGGAG
AGCGAGGCGGAGGAAGACAACCAAGAAGGGGAATCAGAGGCAGAAGGAGAAACTGAGGCAGAAAGCGAAT
TTGACCCCGAAATAGAGATGGAAGCGGAGAGAGTGGCCAAGAGGAAGTGTCCAGACCATGGGCTGGATTT
GAGCACCTATTGTCAGGAAGATAGGCAGCTCATCTGTGTCCTGTGTCCAGTCATTGGGGCTCACCGGGGC
CACCAGCTGTCCACGCTGGACGAAGCCTTCGAAGAACTGAGAAGCAAAGATTCCGGTGGACTGAAGGCAG
CAATGATAGAGTTGGTGGAAAGGTTAAAGTTCAAGAGCTCAGACCCTAAAGTAACTCGAGACCAGATGAA
GATATTTATACAGCAAGAATTTAAGAAAGTTCAGAAAGTTATTGCTGATGAGGAGCAGAAGGCCCTTCAT
TTAGTGGATATCCAAGAAGCAATGGCCACGGCTCATGTGACTGAGATATTGGCGGACATCCAATCTCACA
TGGATAGGTTGATGACTCAGATGGCCCAGGCCAAGGAACAACTTGATACCTCTAATGAATCAGCTGAGCC
AAAGGCAGAGGGTGACGAGGAAGGACCCAGCGGTGCCAGTGAAGAAGAGGACACATGA

Translation (345 aa):
MASGVGAACEELPPDGTCDECEPDEAPGAEEVCRDCGFCYCRRHADAHRQKFLSHRLAAYVHGAQAWTPP
ASGGDDALPEDGEAKGEAEGEVESEVGEEESETEVDSESEEESETEEDSEDESDEESEEDSEEEMEDEQE
SEAEEDNQEGESEAEGETEAESEFDPEIEMEAERVAKRKCPDHGLDLSTYCQEDRQLICVLCPVIGAHRG
HQLSTLDEAFEELRSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKIFIQQEFKKVQKVIADEEQKALH
LVDIQEAMATAHVTEILADIQSHMDRLMTQMAQAKEQLDTSNESAEPKAEGDEEGPSGASEEEDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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