NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56664.1 Public Mus musculus 1 Hhipl2 23 108 98 CCDS HistoryNCBI Gene:78772Re-query CCDS DB by CCDS ID:56664.1Re-query CCDS DB by GeneID:78772See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065900.9 ENSMUSP00000070719.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065900.9Link to Ensembl Protein Viewer:ENSMUSP00000070719.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065900Re-query CCDS DB by Protein ID:ENSMUSP00000070719
Original member Current member NCBI NM_030175.5 NP_084451.2 Accepted alive Link to Nucleotide Sequence:NM_030175.5Link to Protein Sequence:NP_084451.2Re-query CCDS DB by Nucleotide ID:NM_030175Re-query CCDS DB by Protein ID:NP_084451Link to BLAST:NP_084451.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084451.2 717 Q9D2G9-1 717 100% 0 0

Chromosomal Locations for CCDS 56664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 183418512 183418829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183423439 183424091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183425055 183425198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183426490 183426821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183427978 183428104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183428554 183428696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183433074 183433155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183435043 183435125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183436209 183436480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGCTGGGAAAACATACTAGCCCACACACTGTTCCTGGTCATCGGGCCCCGTGGCTCTCTCCTGGCATTT
TCTGCCTGGGCCTCCCGTTCTTGTTGGGCTGGGTGGGCCTGCTGCAGGGACACCCCCAGTGCTTGGATTA
TGGACCACCCTTCCGTCCTCCTCAGCACCTGGACTTTTGCTCTGACTATGACTCCTTCGGCTGCTGTGAT
CAGCGCAAAGACCGCCGCATCGCTGCCAGGTACTGGGACATCATGAGCTACTTTGACCTGAAGGCCCACG
AGCTGTGTGGAGGTTACATTAAAGACATCCTTTGCCAGGAGTGTTCTCCCTACGCGGCTCACCTCTACGA
TGCCGAGAACCCCCAGACACCGCTCCGGAACCTTCCGGGCCTCTGCTCTGACTACTGCTCTGCCTTCCAC
CGCAGCTGCCACTCGGCCATCTCCTTGCTAACCAATGACCGTGGCCTCCAGGAGTCCCATGGCAAAGATG
GTGCTCGCTTCTGTCACCTCCTCAACCTTCCTGACGAGGACTACTGCTTCCCCAATGTCCTGAGGAACGA
TCAACTCAACCGCAACCTGGGAGTGGTGGCTGAGGACCAGCAGGGCTGCCTGCAGCTCTGCCTGGTCGAG
GTGGCCAATGGCTTGAGGAACCCTGTGTCCATGGTCCACGCTGGGGATGGCACCCACCGCTTCTTTGTCG
CTGAGCAGGTAGGAGTGGTGTGGGTCTACCTCCCTGATGGGAGCCGCCTGGAACAGCCCTTCCTGGATCT
CAAGAGCATGGTGCTGACCACACCGTGGATCGGGGATGAGAGAGGCTTCTTGGGTCTCGCTTTTCACCCC
AAATTCCGCCACAACCGCAAGTTCTACATTTATTATTCATGCCTGGGCAAGAGGAAGGTGGAGAAAATCC
GGATTAGTGAGATGAAGGTTTCCCTGTCTGACGGCAACAGAGCAGATCCCAAATCAGAGAGGGTCATCTT
GGAGATAGACGAACCAGCCTCCAACCACAATGGTGGACAGCTTCTCTTTGGCCTGGATGGTTATCTGTAC
ATATTCACTGGGGACGGAGGGCAGGCTGGGGATCCCTTTGGCAAGTTCGGAAATGCTCAGAACAAAAGTT
CTCTGCTGGGGAAAGTGTTAAGGATTGATGTGAATGGGGCAGACGTGGATGGCCAGCGGTACCGAGTGCC
CCTGGACAATCCGTTTGTCTCTGAGCCAGGTGCCCACCCTGCCGTCTATGCTTACGGGGTCAGAAACATG
TGGCGCTGTGCTGTGGACCGAGGAGACCCCGTCACACACCGGGGCCGAGGTCGGATATTCTGTGGGGACG
TGGGCCAGAACAAGTTCGAGGAAGTCGACCTTATAGTTAAAGGCGGGAACTATGGCTGGAGAGCCAAGGA
AGGGTTTGAATGTTATGACAAGAGACTTTGCCGTAATGCGTCCTTGGATGACATTCTGCCCATCTATGCT
TATGGCCATGGGGTAGGAAAGTCAGTCACTGGAGGGTATGTCTACCGTGGGTGTGAATCCCCCAATCTCA
ATGGACTCTACATCTTTGGGGACTTCATGAGTGGTCGACTTATGGCTTTGCAGGAAGATAGGAAAACCCA
GAAATGGACAAAGCGAGACATCTGCTTGGGCAACTCGACCTGCGCCTTCCCGGGGCTGATCAGTGCATAC
AGCAGGTTCATCATCTCCTTTGCTGAAGATGAAGCAGGAGAGCTGTATTTCCTGGCCACCTCCTACCCAA
GTGCCTATGCGCCACATGGATCTATTTACAAGTTTGTCGATCCTTCAAGGCGAGCCCCACCAGGCAAGTG
CAAATACAAGCCAGTGCCCGTGAAAACCAAGAGTAAGAAGGTCCGGTTCCGGCCACTCGCCGCCACAGTC
TTGGACTTGCTGAAGGAGGAATCGCAGAAAGCAGCCCGAAAAGCATCCAACGCAACCTTCACTTCTAGCT
CAGACAGGGTTGCATCTCAGAAGGGCTCCCTCAAGAAGCCAGCTTCTTCCCGAAGCAGCAAGAAAACATT
TCGAAGGCCTGGTACCAAGAAGAAAAGCAGAGTGTGGTCCCCACGTCCCCAGGGCAAGAGGAAGCCCAAT
CTTGACAGCCATGGTGTAGGGATGAGACAGGCCGCAGGCAGAAGTCACCCATGA

Translation (717 aa):
MLGKHTSPHTVPGHRAPWLSPGIFCLGLPFLLGWVGLLQGHPQCLDYGPPFRPPQHLDFCSDYDSFGCCD
QRKDRRIAARYWDIMSYFDLKAHELCGGYIKDILCQECSPYAAHLYDAENPQTPLRNLPGLCSDYCSAFH
RSCHSAISLLTNDRGLQESHGKDGARFCHLLNLPDEDYCFPNVLRNDQLNRNLGVVAEDQQGCLQLCLVE
VANGLRNPVSMVHAGDGTHRFFVAEQVGVVWVYLPDGSRLEQPFLDLKSMVLTTPWIGDERGFLGLAFHP
KFRHNRKFYIYYSCLGKRKVEKIRISEMKVSLSDGNRADPKSERVILEIDEPASNHNGGQLLFGLDGYLY
IFTGDGGQAGDPFGKFGNAQNKSSLLGKVLRIDVNGADVDGQRYRVPLDNPFVSEPGAHPAVYAYGVRNM
WRCAVDRGDPVTHRGRGRIFCGDVGQNKFEEVDLIVKGGNYGWRAKEGFECYDKRLCRNASLDDILPIYA
YGHGVGKSVTGGYVYRGCESPNLNGLYIFGDFMSGRLMALQEDRKTQKWTKRDICLGNSTCAFPGLISAY
SRFIISFAEDEAGELYFLATSYPSAYAPHGSIYKFVDPSRRAPPGKCKYKPVPVKTKSKKVRFRPLAATV
LDLLKEESQKAARKASNATFTSSSDRVASQKGSLKKPASSRSSKKTFRRPGTKKKSRVWSPRPQGKRKPN
LDSHGVGMRQAAGRSHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH