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Report for CCDS26948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26948.1 Public Mus musculus 14 Ccser2 23 108 98 CCDS HistoryNCBI Gene:72972Re-query CCDS DB by CCDS ID:26948.1Re-query CCDS DB by GeneID:72972See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090024.10 ENSMUSP00000087478.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090024.10Link to Ensembl Protein Viewer:ENSMUSP00000087478.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090024Re-query CCDS DB by Protein ID:ENSMUSP00000087478
Original member Current member NCBI NM_027045.1 NP_081321.1 Accepted alive Link to Nucleotide Sequence:NM_027045.1Link to Protein Sequence:NP_081321.1Re-query CCDS DB by Nucleotide ID:NM_027045Re-query CCDS DB by Protein ID:NP_081321Link to BLAST:NP_081321.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081321.1 833 Q3UHI0-1 833 100% 0 0

Chromosomal Locations for CCDS 26948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 36879668 36879762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36890342 36890426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36896255 36896344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36898164 36898250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36900762 36900845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36909017 36909212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36918434 36918596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36926839 36926929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36938584 36938780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36939812 36941225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGGAAGAAAAAACACAAATCAAGACATTTTTGGGTTCCAAGCTGCCGAAATATGGAATGAAATCTGTGA
GAAGTACATTGCAGCCGATGCCAAATGGCGCCACTGTGACTTTATTAGGGACCTCCAAGAGTAGTAATGT
CAAAAGTTACATAAAAAATAATGGCTCTGATTGTTCATTGTCCCATTCATTTAATTGGAGAAAAACAAAT
AAATATCAACTTGGTTCACAAAATACAGCAGAACTTAATAATATTCAAAGTACACATGATAAACTAATTG
AGCCTGAACAACATGCACCTGCTCCAGGAACGCTGGATGGGCATGGGATAAAGGGAGGTTTGAAAAGTGC
TTCCTTGTTCACATCCAAGTTAGCAAGACCATCAACCATGTTTGTGTCATCGGCAGAGGAGTTAAGTCAA
AAATCTTTCTCTGGACCATCTAATTTGGGTAAATTTACCAAAGGCACATTACTAGGAAGGACTTCATATT
CTTCGGTCAATGCGAAGTCACATTTGAATGCGTTTTATGGGAACAGATCTTCTGGTAACGTGCAGAAGCC
AAGAGTGAACTCCTGTGCCAGCAGAAGTAGTTCTGGAGAAAGCTTAGCACAGTCCCCAGACAATGCTAAA
TCTATCACTTGTGAAAAAATGGTAAGGTCACAAAGTTTTTCACATTCCATTCAGAATGTCTTCCTTCCAC
CTTCATCTATAACCAGATCGCATTCCTTCAACAGAGCTGTAGACCTTACAAAGCCTTATCAGAACCAACA
GCTCCCCGTTCGAGTGCCTCTCCGGTCAGGTATGCTAACAAGAAGTTCTCTGCAGTCAGAAGTACTCAAT
GGGAACGAACATGTGGGGTTTGGTTTTAATAGGCCTTATGCTGCTGCTGGAAAGAAACTGGCCTTATCCA
ATGGCCCCGCTGTCTCGTCCACGTTGGTTTATAGGATGGCTCATCCCCCTCTACTGAAATCTAGCCGACC
TCCATTTTCTGGGCCCATGACAGTTGACAGTAATAAAAACCCACCTGCTGACATGTGCGTAGAGGAAGAA
GGTATGGTTTCAGCCCAGGACAGCTCTCCGGGTAAGGACCAAGAACTAATTGAAAATGAAAGTTACCGAA
GAGACAATGACCAGACTGGGAAGAACGAGTCTAAAGTTAGGTACCTGAGCGATGACGTGGATGATATTTC
CTTGTCGTCCTTGTCGTCTTCCGACAAGAATGATTTAAGTGAAGATTTCAGCGATGATTTCATAGACTTA
GAGGACTCCAACAGAACTAGAATAACGCCAGAGGAAATGACTCTCAAAGAAGAAAAGCATGAGAGCAGAC
CATCAAAGGATATATTTGATTCTCCTAAGGAAAGTGAGCAGGCCTTCAGTAAAGCTGAAGAGTGGATAGA
TATAAGTGTCTCTGACAGGAGTGAATGTACAAAGCATACATCTGGAAACAACTTGATTTCACCGGATACG
GATTACAGAGCTGGGTCTTCATTTGAACTCTCTCCGTCCGATAGCTCTGATGGAACGTACATGTGGGATG
AAGAGGGCCTGGAGCCCATTGGGAGTGTCCATCCTGTTGGCAGCTATGAGTCCTCTGAAATGAACAGCAT
AGATATTCTGAATAACCTTGAGTCGTGTGACCTTGAGGATGATGACCTTATGTTGGATGTGGATTTGCCG
GAGGACGCACCTCTTGAAAATGTGGAGTGTGACAATATGAACCGCTTTGACCGAACAGACAGAAATGTAC
GACAGTCGCAGGACGGATTTTGGAAAAGGCCACCCCAGAGGTGGAGTGGACAGGACCATTACCACCTCAG
CCACCCTGGTCACTATCATCACCATGGACAAAGTGACTTGAGCAGAGGCTCTCCTTATAGAGAATCTCCT
TTGGGTCATTTTGAAAGCTATGGAGGGACCCCCTTTTTCCAGGCTCAGAAGATGTTTGTAGATGTGCCCG
ACAACACAGTGATCCTGGATGAGATGACCCTCCGGCACATGGTCCAGGATTGCACAGCTGTGAAAACGCA
GTTACTGAAACTCAAGCGTCTGTTACACCAGCATGACGGAAGTGGATCATTGCATGATGTTCAGCTCTCA
TTGCCATCCAGTCCAGAGCCAGAAGACGGTGATCAGATATATAAGAATGAAGATTTACTAAATGAAATAA
CACAACTTAAAGAGGAAATAAAGAAAAAAGATGAAAAAATCCAACTATTAGAGCAGCAGCTTGCAACTCG
ATGTAACTGTCAGCAGAAATCTAAAGAGGAAAAGTGTACATATGCTGATAAATATACCCAGACACCCTGG
AGACGGATTCCTGGTGGGTATTGTGCACCCTCCTTCTCTCCTTGGCAGGGCTCCTTCCAGGGGATGCCAC
GGACTGTACCGCCGCACCGCAGACAGACCTCAAGTACTACAGCCTTCCAGCAGCCTTCCCAGATCTACAG
ACCACGCCCAGGGAAAACTAATAAAGCCACAACGTACCGAGGCCCACAGTGA

Translation (833 aa):
MEEKTQIKTFLGSKLPKYGMKSVRSTLQPMPNGATVTLLGTSKSSNVKSYIKNNGSDCSLSHSFNWRKTN
KYQLGSQNTAELNNIQSTHDKLIEPEQHAPAPGTLDGHGIKGGLKSASLFTSKLARPSTMFVSSAEELSQ
KSFSGPSNLGKFTKGTLLGRTSYSSVNAKSHLNAFYGNRSSGNVQKPRVNSCASRSSSGESLAQSPDNAK
SITCEKMVRSQSFSHSIQNVFLPPSSITRSHSFNRAVDLTKPYQNQQLPVRVPLRSGMLTRSSLQSEVLN
GNEHVGFGFNRPYAAAGKKLALSNGPAVSSTLVYRMAHPPLLKSSRPPFSGPMTVDSNKNPPADMCVEEE
GMVSAQDSSPGKDQELIENESYRRDNDQTGKNESKVRYLSDDVDDISLSSLSSSDKNDLSEDFSDDFIDL
EDSNRTRITPEEMTLKEEKHESRPSKDIFDSPKESEQAFSKAEEWIDISVSDRSECTKHTSGNNLISPDT
DYRAGSSFELSPSDSSDGTYMWDEEGLEPIGSVHPVGSYESSEMNSIDILNNLESCDLEDDDLMLDVDLP
EDAPLENVECDNMNRFDRTDRNVRQSQDGFWKRPPQRWSGQDHYHLSHPGHYHHHGQSDLSRGSPYRESP
LGHFESYGGTPFFQAQKMFVDVPDNTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDVQLS
LPSSPEPEDGDQIYKNEDLLNEITQLKEEIKKKDEKIQLLEQQLATRCNCQQKSKEEKCTYADKYTQTPW
RRIPGGYCAPSFSPWQGSFQGMPRTVPPHRRQTSSTTAFQQPSQIYRPRPGKTNKATTYRGPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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