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Report for CCDS78504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78504.1 Public Homo sapiens X FRMD7 24 110 108 CCDS HistoryNCBI Gene:90167Re-query CCDS DB by CCDS ID:78504.1Re-query CCDS DB by GeneID:90167See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000464296.1 ENSP00000417996.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000464296.1Link to Ensembl Protein Viewer:ENSP00000417996.1Re-query CCDS DB by Nucleotide ID:ENST00000464296Re-query CCDS DB by Protein ID:ENSP00000417996
Original member Current member NCBI NM_001306193.2 NP_001293122.1 Accepted alive Link to Nucleotide Sequence:NM_001306193.2Link to Protein Sequence:NP_001293122.1Re-query CCDS DB by Nucleotide ID:NM_001306193Re-query CCDS DB by Protein ID:NP_001293122Link to BLAST:NP_001293122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293122.1 699 Q6ZUT3-2 699 100% 0 0

Chromosomal Locations for CCDS 78504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 132077872 132078966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132080006 132080081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132080198 132080266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132082363 132082526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132084490 132084585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132085581 132085728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132085920 132086034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132094042 132094139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132097266 132097299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132099468 132099510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132100612 132100716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 132127788 132127844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGCTACATTTAAAAGTGCAGTTTTTGGATGATTCCCAGAAGATTTTTGTGGTTGATCAAAAGTCATCCG
GGAAGGCATTGTTTAACCTGAGTTGCAGCCATCTAAATCTTGCTGAAAAGGAATATTTTGGATTAGAATT
CTGCAGCCATTCTGGAAATAATGTTTGGCTGGAGCTTTTGAAGCCCATAACAAAGCAGGTAAAAATGGAC
CCTGGACATCTGCGGGAAGAACTTACAAGGTATCTTTTTACTCTTCAAATAAAGAAGGATTTGGCTCTAG
GAAGGCTTCCATGCAGTGACAACTGTACAGCGTTGATGGTATCTCACATCTTACAATCAGAACTTGGAGA
CTTTCATGAAGAAACAGATAGGAAGCATCTGGCACAAACTCGGTACTTACCAAACCAAGACTGTTTAGAG
GGCAAGATCATGCACTTTCATCAGAAGCACATTGGCAGGAGCCCAGCTGAATCTGACATTCTGCTACTGG
ACATAGCAAGGAAGCTGGATATGTATGGCATCAGGCCTCACCCCGCCAGTGATGGTGAAGGGATGCAGAT
TCACCTGGCTGTTGCTCACATGGGAGTACTGGTGTTACGGGGAAATACAAAGATCAATACTTTTAACTGG
GCTAAAATCCGCAAGTTGAGTTTTAAGAGAAAGCATTTTCTCATCAAACTTCATGCCAATATCTTGGTGT
TGTGCAAGGATACCTTGGAGTTCACCATGGCCAGCCGAGATGCCTGCAAGGCTTTCTGGAAGACTTGTGT
GGAATACCATGCTTTCTTCAGGCTTTCGGAAGAGCCCAAATCAAAGCCCAAAACCCTACTCTGCAGCAAG
GGTTCCAGTTTCCGCTATAGTGGACGAACCCAAAGGCAACTTTTGGAATATGGGAGAAAAGGGAGGCTGA
AGAGCTTGCCATTTGAAAGGAAACATTACCCATCTCAGTACCATGAACGACAGTGCAGGTCCTCACCAGA
CCTCCTCTCTGATGTGTCAAAACAAGTGGAAGATTTGAGACTAGCATATGGTGGTGGCTACTACCAAAAT
GTGAATGGAGTGCACGCATCTGAGCCAGTGCTGGAGAGTAGGAGGAGGAATTCTGCATTGGAGGTGACAT
TTGCAACTGAGCTGGAGCATTCCAAACCAGAGGCGGATCCCACATTGCTACATCAGTCCCAAAGCAGTTC
CTCTTTCCCTTTTATTTATATGGACCCTGTCTTTAACACTGAGCCCAATCCTAACCCTGATCCCAGAGAC
ATTTTTTCAGAGAGGAGTTCTCTAAGCTCCTTCCAAACAAGCTGTAAGTTTTCTGGTAATCACATGAGCA
TATATTCTGGCCTCACAAGCAAAGTGCGTCCAGCAAAGCAGCTAACTTACACGGATGTGCCCTATATTCC
TTGTACAGGTCAGCAGGTTGGTATTATGCCTCCCCAGGTCTTTTTTTATGTGGACAAGCCACCCCAGGTG
CCCAGATGGTCCCCAATTAGAGCAGAGGAAAGGACAAGTCCACATAGCTATGTAGAGCCCACTGCAATGA
AGCCAGCTGAAAGAAGCCCAAGGAATATCAGAATGAAGAGCTTTCAGCAAGACCTGCAAGTACTCCAAGA
AGCTATAGCCAGGACTAGCGGTAGGAGCAACATCAATGTAGGTCTAGAAGAGGAAGACCCAAATTTGGAA
GATGCATTTGTATGTAACATTCAAGAGCAAACCCCTAAAAGGTCCCAGAGCCAATCAGACATGAAAACTA
TTCGTTTTCCTTTTGGGTCAGAATTTAGACCTTTAGGGCCTTGTCCTGCTCTCAGTCATAAAGCAGACCT
GTTTACGGATATGTTTGCAGAGCAGGAGTTGCCAGCAGTTCTAATGGATCAAAGTACAGCAGAAAGGTAT
GTAGCTAGTGAATCCAGTGATTCTGAATCAGAGATTCTTAAACCAGACTACTATGCTTTGTATGGCAAAG
AAATAAGGTCACCCATGGCCAGAATCCGCCTGTCTTCTGGTAGTCTACAGTTAGATGAAGAAGATGAAGA
TGCTTATTTCAACACACCAACTGCTGAAGACAGGACTTCACTAAAACCATGTAATTACTTTTTAGCTTAA

Translation (699 aa):
MLHLKVQFLDDSQKIFVVDQKSSGKALFNLSCSHLNLAEKEYFGLEFCSHSGNNVWLELLKPITKQVKMD
PGHLREELTRYLFTLQIKKDLALGRLPCSDNCTALMVSHILQSELGDFHEETDRKHLAQTRYLPNQDCLE
GKIMHFHQKHIGRSPAESDILLLDIARKLDMYGIRPHPASDGEGMQIHLAVAHMGVLVLRGNTKINTFNW
AKIRKLSFKRKHFLIKLHANILVLCKDTLEFTMASRDACKAFWKTCVEYHAFFRLSEEPKSKPKTLLCSK
GSSFRYSGRTQRQLLEYGRKGRLKSLPFERKHYPSQYHERQCRSSPDLLSDVSKQVEDLRLAYGGGYYQN
VNGVHASEPVLESRRRNSALEVTFATELEHSKPEADPTLLHQSQSSSSFPFIYMDPVFNTEPNPNPDPRD
IFSERSSLSSFQTSCKFSGNHMSIYSGLTSKVRPAKQLTYTDVPYIPCTGQQVGIMPPQVFFYVDKPPQV
PRWSPIRAEERTSPHSYVEPTAMKPAERSPRNIRMKSFQQDLQVLQEAIARTSGRSNINVGLEEEDPNLE
DAFVCNIQEQTPKRSQSQSDMKTIRFPFGSEFRPLGPCPALSHKADLFTDMFAEQELPAVLMDQSTAERY
VASESSDSESEILKPDYYALYGKEIRSPMARIRLSSGSLQLDEEDEDAYFNTPTAEDRTSLKPCNYFLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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