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Report for CCDS27995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27995.1 Public Mus musculus 16 Ccdc116 23 108 98 CCDS HistoryNCBI Gene:76872Re-query CCDS DB by CCDS ID:27995.1Re-query CCDS DB by GeneID:76872See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023452.15 ENSMUSP00000023452.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023452.15Link to Ensembl Protein Viewer:ENSMUSP00000023452.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023452Re-query CCDS DB by Protein ID:ENSMUSP00000023452
Original member Current member EBI ENSMUST00000115711.9 ENSMUSP00000111376.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115711.9Link to Ensembl Protein Viewer:ENSMUSP00000111376.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115711Re-query CCDS DB by Protein ID:ENSMUSP00000111376
Original member Current member EBI ENSMUST00000232033.1 ENSMUSP00000155923.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232033.1Link to Ensembl Protein Viewer:ENSMUSP00000155923.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232033Re-query CCDS DB by Protein ID:ENSMUSP00000155923
Original member Current member NCBI NM_001306169.1 NP_001293098.1 Accepted alive Link to Nucleotide Sequence:NM_001306169.1Link to Protein Sequence:NP_001293098.1Re-query CCDS DB by Nucleotide ID:NM_001306169Re-query CCDS DB by Protein ID:NP_001293098Link to BLAST:NP_001293098.1
Original member Current member NCBI NM_029779.2 NP_084055.2 Accepted alive Link to Nucleotide Sequence:NM_029779.2Link to Protein Sequence:NP_084055.2Re-query CCDS DB by Nucleotide ID:NM_029779Re-query CCDS DB by Protein ID:NP_084055Link to BLAST:NP_084055.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293098.1 541 Q80X53 541 100% 0 0
NP_084055.2 541 Q80X53 541 100% 0 0

Chromosomal Locations for CCDS 27995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17141198 17142202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17142331 17142879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17144011 17144082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCGAGGTGCCGCCACCACTCAGGATATCTGGCTGACGACGAGGCTGCTCACAGCACCTATGTGGCCC
CGCTGCCCAAGAAGCACCTGTTGCCAGAAATGAGGCCAACCTGCAAGCTTGGGCGTGTACCACACCTACC
ATCAATGAACCAATACTCAGAGCACCAAAGCCACCAGCAAAACTTTAGGCACCCTCTGGCATTTGGTGGC
TTCCTGGATTTCCTCACGGAGGGTCAGGTACTGGACAGCTTGCAGACAGTTGTGGAGCAGGCAACAGAAC
GTTTGGCTGCCATGAAGACAGAGGCTGGCGTGCCACTGGTGGATATTCAAGACCCCGTGGAGGTGCCAAG
TAGTAGGCATCGATCTCGAGCCAGACCCAGCATCGACACTGTGCACCGGCACCGTGCTCGGCCCACCCTG
TGTGCTGGACGCCCAAACAATTACCCATCTTGCTCCAGTTCCATGTCTGATTCCCATAGCAGCATCACAG
CTGGATGGCTGGGGTCCCACAGCCAAGACAGTGACCTGGGTGCCAGAGGCATAGGCTCACTGCCACCTAT
GAGGGACAAACTCCTGCTTGAGAAAAACCTCAAGAGGCTACTCCGACTGGAAAACAAAGGGAAAATCCTG
AATCAATCCTGCTCCCAGAGGGATTCCCTGCTGTGGGACTCACTGGGCAGCCAAACCAGCAGTCAGTGGA
CCCGGGAGCAGCCCCTGTCTTGGTTCTCTGGGCTATTGGGCTCCAGTCCAGCCACCCCTGAAACTTCAGA
GTTGGGACTTGGAGAACAGGAGATGATTTTCCTCAAACAAAAGTTAAACAAGGAGATGAAGTCACTGCTG
AACCAGCCAAGACCCTTCAACCTGCCTACCTATTGTCCACTCAGGGAACCCCATCATACCCTGGACTTCC
TAGCTAAGCATCGTCTCTTTCCTGCCCTGCAGCGTGTGGTCAGCCAGGCTGTAGACAAGCTCAGCCATGC
CTGCCGTCACAATGGCTTCCCCCTCTTCCCAGTTACCTCAGAGACCATTCCAGATCTGCCTGGAAACTCC
GATCTTCTGCAGCCCAGCTCTAAGGCTTCCATACCCACCAACAGGGAGGCTAGGGGAGAGCCTTGTGATT
CTCTCACCACAGCCTACAGCCCTAAGACATCTCACAGAAAAAGCAAGGGCAGAAGGGGCTCCCCACCTAA
TGCAGTCCAGATGGCTACCAGATTCAGGCTCAAGGTGACACCTACACAAGTCTCTAATGTCCCTATCTCC
TCATTCCACTCCATGCAGGAGGCCCCTAACTCTGAACCCAAACTGCAGAAACAAGCTATGGCCTCAAACT
GCAACCATATCTCTCAGCCCTGTCATGGCCTGCACCTCACCTTGCCTGCCCCTGGGATCACAGTTGAGGT
GGCCTCCTGCCAGGGACGCCTCAGGGGCCCGGTCCAGCATCGTCTTGCCTCCCCCTGCTGTCTTCATTCC
CATTTCCCTTTCCCTCTGTTCCCCCCATTCCTTTCTTTGGGAAAAAGCTTTTCCACTTCCCCTCCTACAC
TGCATCCAGAGGTGACCTCAAGAGCAGGGCTGGAGGTGTTAGAGCAACCTCTGAAGGGAAGGGGCTCCTT
TACCCACCACTTCTAG

Translation (541 aa):
MARCRHHSGYLADDEAAHSTYVAPLPKKHLLPEMRPTCKLGRVPHLPSMNQYSEHQSHQQNFRHPLAFGG
FLDFLTEGQVLDSLQTVVEQATERLAAMKTEAGVPLVDIQDPVEVPSSRHRSRARPSIDTVHRHRARPTL
CAGRPNNYPSCSSSMSDSHSSITAGWLGSHSQDSDLGARGIGSLPPMRDKLLLEKNLKRLLRLENKGKIL
NQSCSQRDSLLWDSLGSQTSSQWTREQPLSWFSGLLGSSPATPETSELGLGEQEMIFLKQKLNKEMKSLL
NQPRPFNLPTYCPLREPHHTLDFLAKHRLFPALQRVVSQAVDKLSHACRHNGFPLFPVTSETIPDLPGNS
DLLQPSSKASIPTNREARGEPCDSLTTAYSPKTSHRKSKGRRGSPPNAVQMATRFRLKVTPTQVSNVPIS
SFHSMQEAPNSEPKLQKQAMASNCNHISQPCHGLHLTLPAPGITVEVASCQGRLRGPVQHRLASPCCLHS
HFPFPLFPPFLSLGKSFSTSPPTLHPEVTSRAGLEVLEQPLKGRGSFTHHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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