NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36439.1 Public Mus musculus 12 Scfd1 23 108 98 CCDS HistoryNCBI Gene:76983Re-query CCDS DB by CCDS ID:36439.1Re-query CCDS DB by GeneID:76983See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021335.6 ENSMUSP00000021335.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021335.6Link to Ensembl Protein Viewer:ENSMUSP00000021335.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021335Re-query CCDS DB by Protein ID:ENSMUSP00000021335
Original member Current member NCBI NM_029825.3 NP_084101.1 Accepted alive Link to Nucleotide Sequence:NM_029825.3Link to Protein Sequence:NP_084101.1Re-query CCDS DB by Nucleotide ID:NM_029825Re-query CCDS DB by Protein ID:NP_084101Link to BLAST:NP_084101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084101.1 639 Q8BRF7-1 639 100% 0 0

Chromosomal Locations for CCDS 36439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51377585 51377636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51384105 51384175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51387050 51387138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51389282 51389372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51390306 51390428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51392183 51392270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51393821 51393910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51396680 51396735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51397693 51397778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51399999 51400098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51412504 51412643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51414095 51414185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51414850 51414923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51415515 51415596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51422907 51423003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51426038 51426108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51427865 51427944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51431488 51431550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51433231 51433306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51439283 51439336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51442531 51442583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51444984 51445017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51445671 51445736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51447572 51447640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51449907 51449930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGGTGGGAAGCAAGATGGCGGCCACGGCCAGCATTCGGGAGAGGCAAACAGTGGCTCTGAAGCGGATGT
TGAATTTCAATGTGCCTCATGTTAAAAACAGTACTGGAGAACCAGTATGGAAGGTACTCATTTATGACAG
ATTTGGCCAAGATATCATCTCTCCTCTGCTGTCTGTGAAGGAACTGAGAGACATGGGCATCACTCTGCAT
CTCCTTTTGCACTCAGACCGAGATCCGATTCCAGATGTTCCTGCAGTGTACTTTGTGATGCCAACCGAAG
AAAATATTGACAGACTGTGCCAGGATCTTCGAAATCAGCTCTATGAATCCTATTATTTAAATTTTATTTC
TGCGATTTCAAGAAGTAAACTGGAAGACATTGCGAATGCAGCATTGGCCGCTAGTGCAGTCACACAAGTT
GCCAAGGTTTTTGACCAGTATCTCAATTTTATTACTTTGGAAGATGACATGTTTGTATTATGTAATCAAA
ATAAGGAACTTGTTTCATATCGTGCCATTAACAGGCCAGACATCACAGACACAGAGATGGAAACTGTTAT
GGACACTATTGTGGACAGCCTCTTCTGCTTTTTTGTTACATTAGGTGCTGTTCCCATCATCCGATGCTCA
AGAGGAACGGCGGCAGAAATGGTGGCAGTGAAACTAGATAAAAAACTTCGGGAAAATCTAAGAGATGCAA
GAAACAGCCTTTTCACCGGTGATCCACTTGGAACTGGCCAGTTCAGCTTCCAAAGGCCTTTATTAGTCCT
TGTTGACAGAAACATTGACCTGGCAACGCCTTTACACCATACGTGGACATACCAAGCGCTGGTACACGAT
GTGCTGGATTTCCACTTAAACAGAGTAAATTTGGAAGAATCTACAGGAGTGGAAAACTCTCCAGCTGGTG
CTAGACCAAAGAGGAAAAACAAGAAGTCTTACGACTTAACTCCAGTTGATAAATTCTGGCAGAAGCATAA
AGGAAGTCCATTCCCAGAAGTCGCAGAATCAGTCCAACAAGAACTAGAATCTTACAGAGCACAAGAAGAT
GAGGTCAAACGACTGAAGAGCATTATGGGACTAGAAGGAGAGGATGAAGGGGCCATCAGCATGCTTTCTG
ATAACACTGCTAAGCTCACATCAGCTGTCAGTTCTTTGCCAGAACTCCTTGAAAAAAAAAGACTTATTGA
TCTGCACACAAATGTTGCCACTGCTGTTTTAGAACACATAAAGGCAAGAAAACTGGATGTATATTTTGAA
TATGAAGAAAAAATAATGAGCAAGACTACTCTGGATAAGTCCCTCCTAGACGTCATATCCGACCCTGATG
CAGGGACTCCGGAAGACAAAATGAGGCTGTTTCTTATCTATTACATAAGCGCACAGCAAGCACCGTCCGA
GGTTGATTTGGAGCAGTATAAAAAGGCTTTAACAGATGCAGGCTGCAACCTTAGCCCTTTACAGTATATC
AAGCAGTGGAAGGCTTTTGCCAAGATGGCCTCAACTCCTGCCAGCTACGGAAACACTACCACTAAACCAA
TGGGTCTCCTGTCCCGAGTCATGAATACAGGATCACAGTTTGTGATGGAAGGTGTGAAGAACCTGGTATT
GAAGCAGCAGAATCTACCTGTTACTCGGATTTTAGACAATCTCATGGAGATGAAGTCAAACCCTGAAACT
GATGATTATAGATATTTTGATCCCAAAATGCTGCGGAGTAATGACAGCTCAGTTCCTAGGAACAAAAGTC
CATTCCAAGAGGCCATTGTCTTTGTGGTAGGAGGAGGCAACTATATTGAATATCAGAATCTTGTTGACTA
CATAAAGGCAAAGCAAGGCAAGCATATCTTATATGGCTGCAGTGAGATTTTTAATGCTACACAGTTCATA
AAACAGCTGTCACAGCTTGGACAAAAATAA

Translation (639 aa):
MVGSKMAATASIRERQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLH
LLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQV
AKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCS
RGTAAEMVAVKLDKKLRENLRDARNSLFTGDPLGTGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHD
VLDFHLNRVNLEESTGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQED
EVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFE
YEEKIMSKTTLDKSLLDVISDPDAGTPEDKMRLFLIYYISAQQAPSEVDLEQYKKALTDAGCNLSPLQYI
KQWKAFAKMASTPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPET
DDYRYFDPKMLRSNDSSVPRNKSPFQEAIVFVVGGGNYIEYQNLVDYIKAKQGKHILYGCSEIFNATQFI
KQLSQLGQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH