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Report for CCDS6578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6578.1 Public Homo sapiens 9 ATOSB 24 110 108 CCDS HistoryNCBI Gene:80256Re-query CCDS DB by CCDS ID:6578.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322813.10 ENSP00000319897.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322813.10Link to Ensembl Protein Viewer:ENSP00000319897.5Re-query CCDS DB by Nucleotide ID:ENST00000322813Re-query CCDS DB by Protein ID:ENSP00000319897
Original member Current member EBI ENST00000378557.1 ENSP00000367819.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378557.1Link to Ensembl Protein Viewer:ENSP00000367819.1Re-query CCDS DB by Nucleotide ID:ENST00000378557Re-query CCDS DB by Protein ID:ENSP00000367819
Original member Current member EBI ENST00000378561.5 ENSP00000367823.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378561.5Link to Ensembl Protein Viewer:ENSP00000367823.1Re-query CCDS DB by Nucleotide ID:ENST00000378561Re-query CCDS DB by Protein ID:ENSP00000367823
Original member Current member EBI ENST00000603301.5 ENSP00000474335.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000603301.5Link to Ensembl Protein Viewer:ENSP00000474335.1Re-query CCDS DB by Nucleotide ID:ENST00000603301Re-query CCDS DB by Protein ID:ENSP00000474335
Original member Current member EBI ENST00000605244.5 ENSP00000474833.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000605244.5Link to Ensembl Protein Viewer:ENSP00000474833.1Re-query CCDS DB by Nucleotide ID:ENST00000605244Re-query CCDS DB by Protein ID:ENSP00000474833
Original member Current member EBI ENST00000488109.6 ENSP00000475120.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000488109.6Link to Ensembl Protein Viewer:ENSP00000475120.1Re-query CCDS DB by Nucleotide ID:ENST00000488109Re-query CCDS DB by Protein ID:ENSP00000475120
Original member Current member NCBI NM_001317991.2 NP_001304920.1 Accepted alive Link to Nucleotide Sequence:NM_001317991.2Link to Protein Sequence:NP_001304920.1Re-query CCDS DB by Nucleotide ID:NM_001317991Re-query CCDS DB by Protein ID:NP_001304920Link to BLAST:NP_001304920.1
Original member Current member NCBI NM_025182.4 NP_079458.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025182.4Link to Protein Sequence:NP_079458.2Re-query CCDS DB by Nucleotide ID:NM_025182Re-query CCDS DB by Protein ID:NP_079458Link to BLAST:NP_079458.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304920.1 538 Q7L5A3-1 538 100% 0 0
NP_079458.2 538 Q7L5A3-1 538 100% 0 0

Chromosomal Locations for CCDS 6578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35105221 35105374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35105682 35105857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35105941 35106009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35106252 35106410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35106538 35106643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35106833 35106891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35107381 35108274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGCGCCACGTGCAGGCGGAGCCGTCTCCATCCTCAGAGCCGGAGGCTGGCCCTTCACAGCCTCCAGTCA
GGCAGGGGGCCCTCCAGGGTGGCCTGCTCATGGGCTACAGCCCAGCAGGGGGGGCGACATCCCCCGGGGT
CTACCAGGTATCCATCTTTTCCCCTCCGGCTGGTACCTCTGAGCCTCATAGGGCCCTGAAACGACAAGCC
CCATCCACTGAGGGTCCCCGGGAGCTGAAGAGAGGCCCTGGGCTGGGGGCCAGAGAGGGACTACCCCCTG
AAGAACCATCTACTGTGGGGCTCTTAGGCCCAGAGGGACCGGGGCTGGGACTAGGTGTGGCCAGCCAGCA
TTTCTCCCACCGTGGCCTCTGTGTTGTGGAACAGAGAAGTAGTGTCACCTCATCTTGGACTTCGGGGGCC
TGGAGTCCCCCCTGCCCCCCATCAAATGCTTCCTGCAATACTTTGCACACCAGAGACTGGGCCTCCCCAG
ATCCAGGGGGACAGGGGTCCCTGGGGGAGTCCCCAGGGCCAGCCCCTCCAGGCCAGCTGCACACACTTGA
CACTGATTTGCACAGTCTTGCACAAATAGGGGGTAAGAGCCCAGTGGCTGGGGTGGGCAATGGGGGTAGC
CTCTGGCCTAGGGAGTCCCCTGGCACTGCCAATGGGCACAGTCCCGAGCACACACCCCCTGGCCCTGGAC
CCCCAGGCCCCTGCCCCACCAAGCGAAGGCTGCTTCCTGCTGGAGAAGCCCCAGATGTCAGCTCTGAGGA
AGAGGGGCCAGCCCCTCGGAGGCGCCGGGGATCCCTGGGCCACCCTACTGCTGCCAACAGTTCTGATGCC
AAAGCCACACCCTTCTGGAGCCACCTGCTGCCTGGGCCCAAAGAGCCTGTTTTGGACCCAACAGACTGCG
GTCCCATGGGGCGGAGGCTGAAAGGAGCCCGTCGCCTGAAGCTGAGCCCCCTTCGAAGCCTCCGGAAGGG
GCCAGGCCTGCTGAGCCCCCCCAGTGCCTCCCCTGTTCCTACCCCTGCTGTCAGCCGTACCCTGCTGGGC
AACTTTGAGGAATCATTGCTGCGAGGACGTTTTGCACCATCTGGCCACATTGAGGGCTTCACAGCAGAAA
TTGGAGCTAGTGGGTCATACTGCCCCCAGCACGTCACGCTGCCTGTCACTGTCACATTCTTTGATGTTTC
TGAGCAAAATGCCCCGGCTCCCTTCCTGGGCATCGTGGATCTGAACCCCTTGGGGAGGAAGGGTTACAGC
GTGCCCAAGGTGGGCACCGTCCAAGTGACCTTATTTAACCCCAACCAGACTGTGGTAAAGATGTTCCTTG
TGACCTTTGACTTCTCGGACATGCCTGCTGCCCACATGACCTTCCTGCGCCATCGCCTCTTTTTGGTGCC
TGTGGGTGAGGAGGGAAATGCTAACCCCACCCACCGCCTCCTCTGCTACTTGCTGCACCTCAGGTTCCGG
AGCTCCCGCTCAGGCCGCTTAAGCCTGCATGGAGATATCCGCCTGCTTTTTTCCCGCCGGAGCCTGGAGC
TGGACACAGGGCTCCCCTACGAACTGCAGGCTGTGACCGAGGCCCCTCATAATCCACGTTATTCACCTTT
GCCCTGA

Translation (538 aa):
MRHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQA
PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGA
WSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGS
LWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDA
KATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLG
NFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYS
VPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNANPTHRLLCYLLHLRFR
SSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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