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Report for CCDS417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
417.1 Public Homo sapiens 1 ZC3H12A 24 110 108 CCDS HistoryNCBI Gene:80149Re-query CCDS DB by CCDS ID:417.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373087.7 ENSP00000362179.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373087.7Link to Ensembl Protein Viewer:ENSP00000362179.5Re-query CCDS DB by Nucleotide ID:ENST00000373087Re-query CCDS DB by Protein ID:ENSP00000362179
Original member Current member NCBI NM_001323550.2 NP_001310479.1 Accepted alive Link to Nucleotide Sequence:NM_001323550.2Link to Protein Sequence:NP_001310479.1Re-query CCDS DB by Nucleotide ID:NM_001323550Re-query CCDS DB by Protein ID:NP_001310479Link to BLAST:NP_001310479.1
Original member Current member NCBI NM_025079.3 NP_079355.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025079.3Link to Protein Sequence:NP_079355.2Re-query CCDS DB by Nucleotide ID:NM_025079Re-query CCDS DB by Protein ID:NP_079355Link to BLAST:NP_079355.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001310479.1 599 Q5D1E8 599 100% 0 0
NP_079355.2 599 Q5D1E8 599 100% 0 0

Chromosomal Locations for CCDS 417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37475497 37475939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37480290 37480429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37481601 37481835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37482434 37482540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37482737 37483611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGAGTGGCCCCTGTGGAGAGAAGCCTGTCCTGGAAGCCAGCCCCACCATGAGTCTGTGGGAATTTGAGG
ACAGCCACAGCCGTCAGGGCACCCCAAGGCCGGGTCAAGAGCTGGCCGCTGAGGAGGCCTCGGCCCTGGA
ACTGCAGATGAAGGTGGACTTCTTCCGGAAGCTGGGCTATTCATCCACGGAGATCCACAGCGTCCTGCAG
AAGCTGGGCGTCCAGGCAGACACCAACACGGTGCTGGGTGAGCTGGTGAAACACGGGACAGCCACCGAGC
GGGAGCGCCAGACCTCACCGGACCCCTGCCCTCAGCTCCCTCTAGTCCCGCGGGGTGGTGGCACCCCTAA
GGCTCCCAACCTGGAGCCTCCACTCCCAGAAGAGGAAAAGGAGGGCAGCGACCTGAGACCAGTGGTCATC
GATGGGAGCAACGTGGCCATGAGCCATGGGAACAAGGAGGTCTTCTCCTGCCGGGGCATCCTGCTGGCAG
TGAACTGGTTTCTGGAGCGGGGCCACACAGACATCACAGTGTTTGTGCCATCCTGGAGGAAGGAGCAGCC
TCGGCCCGACGTGCCCATCACAGACCAGCACATCCTGCGGGAACTGGAGAAGAAGAAGATCCTGGTGTTC
ACACCATCACGACGCGTGGGTGGCAAGCGGGTGGTGTGCTATGACGACAGATTCATTGTGAAGCTGGCCT
ACGAGTCTGACGGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCGAGCGGCAGGAGTGGAA
GCGCTTCATCGAGGAGCGGCTGCTCATGTACTCCTTCGTCAATGACAAGTTTATGCCCCCTGATGACCCA
CTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGCGTAAGAAGCCACTCACTTTGGAGCACAGGAAGC
AGCCGTGTCCCTATGGAAGGAAATGCACCTATGGGATCAAGTGCCGATTCTTCCACCCAGAGCGGCCAAG
CTGCCCCCAGCGCTCTGTGGCAGATGAGCTCCGTGCCAATGCTCTCCTCTCACCCCCCAGAGCCCCAAGC
AAGGACAAAAATGGCCGGCGGCCTTCACCTTCATCCCAGTCCAGCTCTCTGCTAACAGAGAGTGAGCAGT
GCAGCCTGGATGGGAAGAAGCTGGGGGCCCAGGCATCCCCAGGGTCCCGCCAAGAGGGTCTAACACAGAC
CTATGCCCCATCAGGCAGGAGCCTCGCACCTAGCGGGGGCAGTGGCAGCAGCTTTGGGCCCACAGACTGG
CTCCCACAGACGCTGGACTCACTCCCGTACGTCTCCCAGGATTGCCTGGACTCGGGCATTGGCTCCCTGG
AGAGCCAGATGTCGGAACTTTGGGGGGTTCGAGGAGGAGGCCCTGGTGAGCCGGGCCCACCCCGAGCCCC
TTACACGGGCTACAGTCCCTATGGATCTGAGCTCCCAGCCACCGCAGCCTTCTCTGCCTTTGGCCGGGCC
ATGGGTGCTGGCCACTTCAGTGTCCCTGCCGACTACCCACCCGCGCCCCCTGCCTTTCCACCTCGAGAGT
ACTGGTCTGAACCATACCCACTGCCCCCACCCACATCAGTCCTTCAGGAGCCCCCAGTGCAGAGCCCAGG
GGCTGGCAGGAGCCCGTGGGGCAGGGCAGGCAGCCTGGCCAAGGAGCAGGCCAGCGTGTATACTAAGCTG
TGTGGTGTGTTTCCCCCGCACCTGGTGGAGGCTGTGATGGGGCGCTTCCCACAGCTCCTGGACCCCCAGC
AGCTGGCTGCCGAGATCCTCTCCTACAAGTCCCAGCACCCCAGTGAGTAA

Translation (599 aa):
MSGPCGEKPVLEASPTMSLWEFEDSHSRQGTPRPGQELAAEEASALELQMKVDFFRKLGYSSTEIHSVLQ
KLGVQADTNTVLGELVKHGTATERERQTSPDPCPQLPLVPRGGGTPKAPNLEPPLPEEEKEGSDLRPVVI
DGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF
TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDP
LGRHGPSLDNFLRKKPLTLEHRKQPCPYGRKCTYGIKCRFFHPERPSCPQRSVADELRANALLSPPRAPS
KDKNGRRPSPSSQSSSLLTESEQCSLDGKKLGAQASPGSRQEGLTQTYAPSGRSLAPSGGSGSSFGPTDW
LPQTLDSLPYVSQDCLDSGIGSLESQMSELWGVRGGGPGEPGPPRAPYTGYSPYGSELPATAAFSAFGRA
MGAGHFSVPADYPPAPPAFPPREYWSEPYPLPPPTSVLQEPPVQSPGAGRSPWGRAGSLAKEQASVYTKL
CGVFPPHLVEAVMGRFPQLLDPQQLAAEILSYKSQHPSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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