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Report for CCDS695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
695.1 Public Homo sapiens 1 RPF1 24 110 108 CCDS HistoryNCBI Gene:80135Re-query CCDS DB by CCDS ID:695.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 695.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370654.6 ENSP00000359688.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370654.6Link to Ensembl Protein Viewer:ENSP00000359688.5Re-query CCDS DB by Nucleotide ID:ENST00000370654Re-query CCDS DB by Protein ID:ENSP00000359688
Original member Current member NCBI NM_025065.7 NP_079341.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025065.7Link to Protein Sequence:NP_079341.2Re-query CCDS DB by Nucleotide ID:NM_025065Re-query CCDS DB by Protein ID:NP_079341Link to BLAST:NP_079341.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079341.2 349 Q9H9Y2 349 100% 0 0

Chromosomal Locations for CCDS 695.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 84479282 84479509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84480956 84481012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84482915 84482995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84489633 84489728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84490319 84490472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84495373 84495455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84495882 84496063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84496244 84496370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84497429 84497470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGCGAAAGCCGGGGATAAGAGCAGCAGCAGCGGGAAGAAAAGTCTAAAACGGAAAGCCGCTGCCGAAG
AACTTCAGGAGGCTGCAGGCGCTGGGGATGGGGCGACGGAAAACGGGGTCCAACCCCCGAAAGCGGCTGC
CTTTCCGCCAGGCTTTAGCATTTCGGAGATTAAAAACAAACAGCGGCGACACTTAATGTTCACGCGGTGG
AAACAGCAGCAGCGGAAGGAAAAGTTGGCAGCTAAGAAAAAACTTAAAAAAGAAAGAGAGGCTCTTGGCG
ATAAGGCTCCACCAAAGCCTGTACCCAAGACCATTGACAACCAGCGAGTGTATGATGAAACCACAGTAGA
CCCTAATGATGAAGAGGTCGCTTATGATGAAGCTACAGATGAATTTGCTTCTTACTTCAACAAACAGACT
TCTCCCAAGATTCTCATCACAACATCAGATAGACCTCATGGGAGAACAGTACGACTCTGTGAACAGCTCT
CCACAGTTATACCAAACTCACATGTTTATTACAGAAGAGGACTGGCTCTGAAAAAAATTATTCCACAGTG
CATCGCAAGAGATTTCACAGACCTGATTGTTATTAATGAAGATCGTAAAACCCCAAATGGACTTATTTTG
AGTCACTTGCCAAATGGCCCAACTGCTCATTTTAAAATGAGCAGTGTTCGTCTTCGTAAAGAAATTAAGA
GAAGAGGCAAGGACCCCACAGAACACATACCTGAAATAATTCTGAATAATTTTACAACACGGCTGGGTCA
TTCAATTGGACGTATGTTTGCATCTCTCTTTCCTCATAATCCTCAATTTATCGGAAGGCAGGTTGCCACA
TTCCACAATCAACGGGATTACATATTCTTCAGATTTCACAGATACATATTCAGGAGTGAAAAGAAAGTGG
GAATTCAGGAACTTGGACCACGTTTTACCTTAAAATTAAGGTCTCTTCAGAAAGGAACCTTTGATTCTAA
ATATGGAGAGTATGAATGGGTCCATAAGCCCCGGGAAATGGATACAAGTAGAAGAAAATTCCATTTATAA

Translation (349 aa):
MAKAGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNKQRRHLMFTRW
KQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQT
SPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLIL
SHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT
FHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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