NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42140.1 Public Homo sapiens 16 RABEP2 24 110 108 CCDS HistoryNCBI Gene:79874Re-query CCDS DB by CCDS ID:42140.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358201.9 ENSP00000350934.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358201.9Link to Ensembl Protein Viewer:ENSP00000350934.4Re-query CCDS DB by Nucleotide ID:ENST00000358201Re-query CCDS DB by Protein ID:ENSP00000350934
Original member Current member NCBI NM_024816.3 NP_079092.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024816.3Link to Protein Sequence:NP_079092.2Re-query CCDS DB by Nucleotide ID:NM_024816Re-query CCDS DB by Protein ID:NP_079092Link to BLAST:NP_079092.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079092.2 569 Q9H5N1-1 569 100% 0 0

Chromosomal Locations for CCDS 42140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28904943 28905044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28905397 28905513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28905704 28905759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28905867 28905878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28906019 28906196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28908609 28908764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28910888 28910986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28911084 28911179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28914236 28914586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28914672 28914782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28919786 28919943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28924403 28924615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28925103 28925163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGCGGCAGCTGCGCCGGTGGCCGCGGACGACGATGAGCGGCGGCGGCGGCCGGGGGCTGCACTGGAGG
ACTCCCGGTCCCAGGAAGGGGCAAATGGTGAGGCCGAGTCAGGTGAGCTCAGCCGGCTTCGGGCTGAGCT
GGCAGGCGCCCTGGCAGAAATGGAAACCATGAAGGCTGTGGCAGAGGTGAGCGAGAGCACGAAGGCCGAG
GCTGTGGCTGCGGTGCAGCGGCAGTGCCAAGAGGAGGTGGCCTCGCTGCAGGCCATCCTGAAAGACTCCA
TCAGCAGCTATGAAGCCCAGATCACCGCCCTGAAGCAGGAGCGACAGCAGCAGCAGCAGGACTGTGAGGA
GAAGGAGCGGGAGCTGGGCCGCCTGAAGCAGCTGCTGTCCCGGGCCTACCCCCTGGACTCCCTGGAGAAG
CAGATGGAAAAGGCCCACGAGGACTCGGAGAAGCTGCGGGAGATCGTACTGCCCATGGAAAAGGAGATCG
AGGAGCTGAAGGCGAAGCTGCTGAGGGCCGAGGAGCTGATTCAGGAGATCCAGAGACGTCCCCGGCATGC
CCCTTCCCTGCACGGCTCCACGGAGTTGCTGCCCCTGTCCCGGGATCCATCGCCCCCGCTGGAGCCTCTG
GAGGAGCTGAGCGGAGATGGGGGTCCAGCCGCTGAGGCCTTCGCTCACAACTGCGATGACAGCGCCTCCA
TCTCCTCCTTCTCCCTTGGCGGTGGGGTCGGCAGCAGCTCCTCCCTGCCCCAAAGCCGCCAGGGCCTGAG
CCCTGAACAGGAAGAGACGGCCTCGCTGGTGTCTACGGGCACCCTGGTTCCCGAGGGCATCTACCTGCCC
CCTCCTGGCTACCAGCTCGTCCCAGACACTCAGTGGGAGCAGCTGCAGACAGAGGGCCGACAGCTGCAGA
AGGACCTGGAGAGCGTCAGTCGCGAGCGGGACGAGCTCCAAGAGGGCCTGAGACGGAGCAATGAGGACTG
TGCCAAGCAGATGCAGGTGCTCCTGGCCCAGGTCCAGAACTCAGAGCAGCTGCTGCGGACCCTGCAAGGG
ACCGTGAGCCAGGCCCAGGAGCGGGTGCAGCTGCAGATGGCGGAGCTGGTCACCACCCACAAGTGCCTGC
ACCATGAGGTAAAGCGGTTGAATGAGGAAAACCAAGGGCTCCGGGCCGAGCAGCTGCCATCCTCAGCCCC
CCAGGGCTCGCAGCAGGAGCAGGGCGAGGAGGAATCACTGCCCAGCTCTGTGCCAGAGCTGCAGCAGCTG
CTGTGCTGCACGCGGCAAGAGGCGAGGGCCCGGCTGCAGGCCCAGGAGCACGGGGCCGAGCGCCTGCGGA
TCGAGATCGTGACGCTGCGGGAGGCTCTGGAGGAGGAGACAGTGGCCAGGGCCAGCCTGGAGGGGCAGCT
GAGGGTGCAGCGGGAGGAGACAGAGGTGCTGGAGGCCTCCCTGTGCAGCCTGAGGACAGAGATGGAGCGG
GTGCAGCAGGAACAGAGCAAGGCCCAGCTCCCAGACCTCCTCTCAGAACAGAGGGCCAAGGTGCTGCGGC
TGCAGGCAGAGCTGGAGACCAGTGAGCAGGTGCAGAGGGATTTCGTGCGACTGTCCCAGGCCCTGCAGGT
GCGCCTAGAGCGGATCCGCCAGGCTGAGACCCTGGAGCAAGTGCGCAGCATCATGGATGAGGCGCCACTC
ACGGACGTCAGGGACATCAAGGACACCTGA

Translation (569 aa):
MAAAAPVAADDDERRRRPGAALEDSRSQEGANGEAESGELSRLRAELAGALAEMETMKAVAEVSESTKAE
AVAAVQRQCQEEVASLQAILKDSISSYEAQITALKQERQQQQQDCEEKERELGRLKQLLSRAYPLDSLEK
QMEKAHEDSEKLREIVLPMEKEIEELKAKLLRAEELIQEIQRRPRHAPSLHGSTELLPLSRDPSPPLEPL
EELSGDGGPAAEAFAHNCDDSASISSFSLGGGVGSSSSLPQSRQGLSPEQEETASLVSTGTLVPEGIYLP
PPGYQLVPDTQWEQLQTEGRQLQKDLESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLRTLQG
TVSQAQERVQLQMAELVTTHKCLHHEVKRLNEENQGLRAEQLPSSAPQGSQQEQGEEESLPSSVPELQQL
LCCTRQEARARLQAQEHGAERLRIEIVTLREALEEETVARASLEGQLRVQREETEVLEASLCSLRTEMER
VQQEQSKAQLPDLLSEQRAKVLRLQAELETSEQVQRDFVRLSQALQVRLERIRQAETLEQVRSIMDEAPL
TDVRDIKDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH