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Report for CCDS7535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7535.1 Public Homo sapiens 10 MFSD13A 24 110 108 CCDS HistoryNCBI Gene:79847Re-query CCDS DB by CCDS ID:7535.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7535.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238936.8 ENSP00000238936.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238936.8Link to Ensembl Protein Viewer:ENSP00000238936.3Re-query CCDS DB by Nucleotide ID:ENST00000238936Re-query CCDS DB by Protein ID:ENSP00000238936
Original member Current member NCBI NM_024789.4 NP_079065.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024789.4Link to Protein Sequence:NP_079065.2Re-query CCDS DB by Nucleotide ID:NM_024789Re-query CCDS DB by Protein ID:NP_079065Link to BLAST:NP_079065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079065.2 517 Q14CX5 517 100% 0 0

Chromosomal Locations for CCDS 7535.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 102469030 102469197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102469993 102470075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102470665 102471117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102471273 102471396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102472854 102472950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102473570 102473741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102473819 102474012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102475722 102475984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGGGCTGGGTCAGCCCCAGGCCTGGTTGCTGGGTCTGCCCACAGCTGTGGTCTATGGCTCCCTGGCTC
TCTTCACCACCATCCTGCACAATGTCTTCCTGCTCTACTATGTGGACACCTTTGTCTCAGTGTACAAGAT
CAACAAAATGGCCTTCTGGGTCGGAGAGACAGTGTTTCTCCTCTGGAACAGCCTCAATGACCCCCTCTTC
GGTTGGCTCAGTGACCGGCAGTTCCTCAGCTCCCAGCCCCGGTCAGGCGCCGGGCTCTCCTCAAGGGCTG
TGGTGCTGGCCCGGGTGCAGGCCCTGGGCTGGCATGGGCCGCTGCTGGCGCTGTCGTTCCTGGCGTTCTG
GGTGCCCTGGGCCCCAGCTGGCCTGCAGTTCTTGCTGTGCCTGTGCCTCTATGATGGCTTCCTGACGCTC
GTGGACCTGCACCACCATGCCTTGCTGGCCGACCTGGCCCTCTCAGCCCACGACCGCACCCACCTCAACT
TCTACTGCTCCCTCTTCAGCGCGGCCGGCTCCCTCTCTGTCTTTGCATCCTATGCCTTTTGGAACAAGGA
GGATTTCTCCTCCTTCCGCGCTTTCTGCGTGACACTGGCTGTCAGCTCTGGGCTGGGCTTTCTGGGGGCC
ACACAGCTGCTGAGGCGGCGGGTTGAGGCGGCCCGAAAGGACCCAGGGTGCTCAGGCCTGGTTGTGGATA
GCGGCCTGTGTGGAGAGGAGCTGCTTGTAGGCAGTGAGGAGGCGGACAGCATCACCTTGGGCCGGTATCT
CCGGCAGCTGGCACGCCATCGGAACTTCCTGTGGTTCGTGAGCATGGACCTGGTGCAGGTCTTCCACTGC
CACTTCAACAGCAACTTCTTCCCTCTCTTCCTGGAGCATCTGTTGTCCGACCATATCTCCCTTTCCACGG
GCTCCATCCTGTTGGGCCTCTCCTATGTCGCTCCCCATCTCAACAACCTCTACTTCCTGTCCCTGTGCCG
GCGCTGGGGCGTCTACGCGGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGGGACTTAGCCTGCTCATGTTG
TTGGCCGGCCCGGACCACCTCAGCCTGCTGTGCCTCTTCATTGCCAGCAACCGCGTCTTCACTGAGGGCA
CCTGTAAGCTGCTGACCTTGGTGGTCACTGACCTGGTAGACGAGGACCTGGTGCTGAACCACCGCAAGCA
GGCAGCCTCGGCACTCCTCTTTGGCATGGTTGCCTTGGTGACCAAGCCAGGCCAGACCTTTGCCCCGCTG
CTGGGCACCTGGCTGCTCTGTTTCTACACAGGTCATGACCTCTTCCAGCAGTCCCTCATAACCCCTGTGG
GGAGTGCCCATCCCTGGCCAGAGCCCCCAGCTCCAGCCCCTGCACAGGCCCCGACGCTCCGCCAGGGCTG
CTTCTACCTGCTGGTGCTGGTGCCCATCACCTGTGCTCTGCTGCAGCTCTTCACCTGGTCCCAGTTCACG
CTGCATGGGAGACGCCTGCACATGGTCAAGGCCCAGCGCCAGAACCTGTCACAGGCCCAAACCCTGGATG
TTAAGATGGTGTGA

Translation (517 aa):
MGLGQPQAWLLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFLLWNSLNDPLF
GWLSDRQFLSSQPRSGAGLSSRAVVLARVQALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTL
VDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVTLAVSSGLGFLGA
TQLLRRRVEAARKDPGCSGLVVDSGLCGEELLVGSEEADSITLGRYLRQLARHRNFLWFVSMDLVQVFHC
HFNSNFFPLFLEHLLSDHISLSTGSILLGLSYVAPHLNNLYFLSLCRRWGVYAVVRGLFLLKLGLSLLML
LAGPDHLSLLCLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPL
LGTWLLCFYTGHDLFQQSLITPVGSAHPWPEPPAPAPAQAPTLRQGCFYLLVLVPITCALLQLFTWSQFT
LHGRRLHMVKAQRQNLSQAQTLDVKMV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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