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Report for CCDS26379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26379.1 Public Mus musculus 13 BC005537 23 108 98 CCDS HistoryNCBI Gene:79555Re-query CCDS DB by CCDS ID:26379.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019276.11 ENSMUSP00000019276.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019276.11Link to Ensembl Protein Viewer:ENSMUSP00000019276.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019276Re-query CCDS DB by Protein ID:ENSMUSP00000019276
Original member Current member NCBI NM_024473.3 NP_077793.1 Accepted alive Link to Nucleotide Sequence:NM_024473.3Link to Protein Sequence:NP_077793.1Re-query CCDS DB by Nucleotide ID:NM_024473Re-query CCDS DB by Protein ID:NP_077793Link to BLAST:NP_077793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077793.1 229 Q99LU8 229 100% 0 0

Chromosomal Locations for CCDS 26379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24803381 24803509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24804782 24804958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24805862 24805984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24809886 24810020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24812637 24812762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGGGGACCCAAACTCCCGGAAGAAACAAGCTCTGAACAGACTACGTGCTCAGCTTAGAAAGAAAAAAG
AATCTCTAGCTGACCAGTTTGACTTCAAGATGTACATTGCCTTTGTGTTCAAGGAGAAGAAGAAAAAGTC
AGCACTTTTTGAAGTGTCTGAGGTTATACCAGTCATGACAAATAATTACGAAGAAAATATTCTGAAAGGT
GTGCGAGATTCCAGCTATTCCTTGGAAAGTTCGCTAGAGCTTCTACAGAAGGATGTGGTGCAGCTCCACG
CCCCTCGGTACCAGTCTATGAGAAGGGATGTAATCGGCTGTACTCAGGAGATGGATTTCATTCTTTGGCC
TCGGAATGATATTGAGAAAATCGTTTGTCTCCTGTTTTCTAGGTGGAAGGAATCTGACGAACCTTTTAGG
CCTGTTCAGGCCAAATTTGAATTTCATCACGGTGACTATGAGAAACAGTTTCTGCATGTACTGAGCCGCA
AGGACAAGACAGGAATTGTTGTCAACAATCCTAACCAGTCAGTGTTTCTCTTCATTGACAGACAGCATTT
GCAGACTCCAAAAAACAAAGCCACCATCTTCAAGTTATGCAGCATCTGCCTCTACCTGCCACAGGAACAG
CTCACCCACTGGGCAGTTGGCACCATAGAGGATCACCTCCGTCCTTACATGCCAGAGTAA

Translation (229 aa):
MGDPNSRKKQALNRLRAQLRKKKESLADQFDFKMYIAFVFKEKKKKSALFEVSEVIPVMTNNYEENILKG
VRDSSYSLESSLELLQKDVVQLHAPRYQSMRRDVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFR
PVQAKFEFHHGDYEKQFLHVLSRKDKTGIVVNNPNQSVFLFIDRQHLQTPKNKATIFKLCSICLYLPQEQ
LTHWAVGTIEDHLRPYMPE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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