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Report for CCDS19047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19047.1 Public Mus musculus 4 Cptp 23 108 98 CCDS HistoryNCBI Gene:79554Re-query CCDS DB by CCDS ID:19047.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030950.7 ENSMUSP00000030950.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030950.7Link to Ensembl Protein Viewer:ENSMUSP00000030950.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000030950Re-query CCDS DB by Protein ID:ENSMUSP00000030950
Original member Current member NCBI NM_024472.4 NP_077792.2 Accepted alive Link to Nucleotide Sequence:NM_024472.4Link to Protein Sequence:NP_077792.2Re-query CCDS DB by Nucleotide ID:NM_024472Re-query CCDS DB by Protein ID:NP_077792Link to BLAST:NP_077792.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077792.2 216 Q8BS40 216 100% 0 0

Chromosomal Locations for CCDS 19047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155866357 155866885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155867113 155867234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGATGACTCAGAGAAAGATTTCAACCTTAAAGTCGTCCTGGTCAGCTTCAAGCAGTGTCTCACTGACA
AGGGAGAGGTGCTGCTGGACCACTATATTGCCGGCTGGAAGGGACTTGTCAGGTTTCTAAACAGCCTGGG
GGCCGTCTTCTCATTCATTTCCAAGGATGTGGTCGCAAAGCTGCAGATCATGGAGCGTCTGAGAAGCAGC
CCACAGTCTGAACACTACGCTAGCTTGCAGTCCATGGTAGCCTACGAGGTGAGCAACAAGCTGGTGGACA
TGGATCACCGTTCCCATCCCCGACACCCTCACTCAGGCTGCCGGACTGTGCTGCGCCTACATCGTGCTCT
GCACTGGCTACAGCTGTTCCTGGACGGCCTGCGCACCAGCTCTGAGGATGCTCGTACCTCCACACTCTGC
AGTGAGGCCTACAATGCCACGCTGGCTAACTATCACTCCTGGATAGTACGTCAAGCTGTCACTGTGGCCT
TCTGTGCCTTACCCTCACGCAAGGTCTTCCTCGAGGCCATGAATATGGAGTCCACTGAGCAAGCAGTGGA
GATGCTGGGGGAGGCCCTGCCCTTCATTGAGCATGTGTATGACATCTCCCAGAAGCTCTATGCTGAGCAT
TCCCTGCTAGACCTGCCCTAG

Translation (216 aa):
MDDSEKDFNLKVVLVSFKQCLTDKGEVLLDHYIAGWKGLVRFLNSLGAVFSFISKDVVAKLQIMERLRSS
PQSEHYASLQSMVAYEVSNKLVDMDHRSHPRHPHSGCRTVLRLHRALHWLQLFLDGLRTSSEDARTSTLC
SEAYNATLANYHSWIVRQAVTVAFCALPSRKVFLEAMNMESTEQAVEMLGEALPFIEHVYDISQKLYAEH
SLLDLP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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