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Report for CCDS22047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22047.1 Public Mus musculus 7 Nadsyn1 23 108 98 CCDS HistoryNCBI Gene:78914Re-query CCDS DB by CCDS ID:22047.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033415.14 ENSMUSP00000033415.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033415.14Link to Ensembl Protein Viewer:ENSMUSP00000033415.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033415Re-query CCDS DB by Protein ID:ENSMUSP00000033415
Original member Current member NCBI NM_030221.2 NP_084497.1 Accepted alive Link to Nucleotide Sequence:NM_030221.2Link to Protein Sequence:NP_084497.1Re-query CCDS DB by Nucleotide ID:NM_030221Re-query CCDS DB by Protein ID:NP_084497Link to BLAST:NP_084497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084497.1 725 Q711T7 725 100% 0 0

Chromosomal Locations for CCDS 22047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143795949 143796056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143797825 143798001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143798455 143798583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143799041 143799110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143799791 143799922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143803196 143803302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143804014 143804149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143805915 143806083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143806880 143806982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143807387 143807435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143807985 143808109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143808792 143808866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143811169 143811300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143812490 143812607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143812763 143812851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143813390 143813441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143815586 143815675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143816174 143816227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143819093 143819209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143821172 143821232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143822659 143822743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGGGCCGGAAAGTGACCGTGGCCACCTGTGCACTCAATCAGTGGGCCCTGGACTTTGAGGGCAATTTCC
AGAGGATTTTAAAGAGTATTCAAATTGCCAAAGGCAAAGGTGCAAGATACAGGCTTGGACCAGAACTAGA
AATATGCGGCTATGGATGTTGGGATCATTATCACGAATCAGACACTCTCCTGCATTCGCTCCAAGTTCTG
GCTGCTCTTCTGGACTCTCCGGTCACTCAGGACATCATCTGTGATGTGGGGATGCCTATAATGCACCGGA
ATGTTCGCTACAACTGCAGAGTCATCTTTCTCAACAGGAAGATCCTGCTCATCAGACCCAAGATGGCCTT
GGCCAACGAAGGCAACTACCGGGAACTGCGCTGGTTTACCCCCTGGACCAGGAGCCGACAAACTGAGGAA
TATGTCCTCCCTCGGATGTTACAGGACCTGACAAAGCAGAAAACTGTGCCCTTTGGAGATGTGGTACTGG
CCACCCAAGACACCTGTGTCGGGAGTGAGATCTGTGAGGAGCTCTGGACACCACGCAGCCCCCACATCGA
CATGGGCCTGGATGGTGTGGAGATCATTACCAATGCCTCGGGCAGCCACCACGTGCTCCGCAAAGCCCAT
ACCAGAGTGGATCTGGTAACCATGGCCACCTCCAAGAATGGTGGCATCTACCTGCTGGCCAACCAGAAGG
GCTGTGATGGTGACCGTCTCTACTACGATGGCTGTGCCATGATTGCTATGAACGGGAGCATCTTTGCCCA
GGGCACTCAGTTCTCATTGGATGATGTGGAGGTTCTCACTGCCACCCTGGACCTGGAGGACGTTAGGAGC
TACAAGGCAGAGATCTCATCTCGGAACCTGGAGGCAACCAGGGTGAGCCCATATCCCCGGGTGACGGTGG
ACTTTGCCCTTTCGGTCAGTGAAGACTTGTTGGAGCCAGTGTCAGAGCCTATGGAATGGACATACCACAG
GCCTGAGGAGGAGATAAGCCTCGGCCCTGCCTGCTGGCTCTGGGACTTCCTTCGACGGAGCAAACAGGCC
GGGTTTTTCCTTCCCCTGAGTGGTGGTGTGGACAGTGCAGCCAGCGCCTGTATCGTCTACTCCATGTGCT
GCCTGGTCTGCGATGCTGTGAAGAGCGGAAATCAGCAAGTGCTGACAGACGTCCAGAACCTGGTGGACGA
GAGCAGCTACACCCCTCAGGATCCCCGGGAGCTCTGCGGACGGCTGCTCACTACTTGTTACATGGCCAGC
GAGAACTCCTCCCAGGAGACCCACAGCAGAGCCACAAAACTGGCTCAGCTGATTGGAAGCTACCACATCA
ATCTGAGCATCGACACTGCTGTGAAGGCTGTCTTGGGCATCTTCAGCCTGATGACCGGGAAGTTGCCTCG
GTTCTCAGCCCACGGAGGGAGCAGCAGGGAGAACCTGGCCTTGCAGAATGTGCAGGCTCGGATTAGGATG
GTCCTTGCCTACCTGTTTGCTCAGCTGAGCCTCTGGTCTCGGGGTGCTCGAGGAAGCCTTCTTGTGCTTG
GATCTGCCAATGTGGATGAGAGTCTCCTCGGCTACCTGACCAAGTACGACTGCTCCAGTGCGGACATCAA
CCCCATAGGCGGCATCAGCAAGACGGACCTGAGAGCCTTTGTCCAGTTTTGCGCAGAGCGCTTCCAGCTT
CCTGTTCTGCAGACCATCCTGTCAGCACCGGCCACTGCAGAGCTGGAGCCCTTAGCTGATGGGCAGGTGT
CTCAGATGGATGAGGAAGACATGGGGATGACGTACGCAGAACTCTCCATCTTCGGCAGGCTCCGGAAGGT
CGCCAAGGCAGGCCCCTACAGCATGTTCTGCAAACTGCTCAACATGTGGAGAGACAGCTATACACCAACA
CAGGTAGCTGAGAAGGTGAAGCTATTTTTCTCAAAGTACTCCATGAACAGGCACAAGATGACAACCCTCA
CACCAGCATATCATGCTGAAAACTACAGTCCTGACGACAACAGGTTTGACCTGAGACCCTTTCTGTATAA
CACGAGATGGCCCTGGCAGTTCCTCTGCATTGACAACCAGGTTCTACAGCTTGAGAGGAAAGCATCGCAG
ACCCGGGAAGAACAGGTCCTGGAGCACTTCAAAGAGCCATCACCTATATGGAAACAGCTCCTCCCCAAGG
ACCCCTAA

Translation (725 aa):
MGRKVTVATCALNQWALDFEGNFQRILKSIQIAKGKGARYRLGPELEICGYGCWDHYHESDTLLHSLQVL
AALLDSPVTQDIICDVGMPIMHRNVRYNCRVIFLNRKILLIRPKMALANEGNYRELRWFTPWTRSRQTEE
YVLPRMLQDLTKQKTVPFGDVVLATQDTCVGSEICEELWTPRSPHIDMGLDGVEIITNASGSHHVLRKAH
TRVDLVTMATSKNGGIYLLANQKGCDGDRLYYDGCAMIAMNGSIFAQGTQFSLDDVEVLTATLDLEDVRS
YKAEISSRNLEATRVSPYPRVTVDFALSVSEDLLEPVSEPMEWTYHRPEEEISLGPACWLWDFLRRSKQA
GFFLPLSGGVDSAASACIVYSMCCLVCDAVKSGNQQVLTDVQNLVDESSYTPQDPRELCGRLLTTCYMAS
ENSSQETHSRATKLAQLIGSYHINLSIDTAVKAVLGIFSLMTGKLPRFSAHGGSSRENLALQNVQARIRM
VLAYLFAQLSLWSRGARGSLLVLGSANVDESLLGYLTKYDCSSADINPIGGISKTDLRAFVQFCAERFQL
PVLQTILSAPATAELEPLADGQVSQMDEEDMGMTYAELSIFGRLRKVAKAGPYSMFCKLLNMWRDSYTPT
QVAEKVKLFFSKYSMNRHKMTTLTPAYHAENYSPDDNRFDLRPFLYNTRWPWQFLCIDNQVLQLERKASQ
TREEQVLEHFKEPSPIWKQLLPKDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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