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Report for CCDS50707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50707.1 Public Mus musculus 2 Zc3h6 23 108 98 CCDS HistoryNCBI Gene:78751Re-query CCDS DB by CCDS ID:50707.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50707.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110320.8 ENSMUSP00000105949.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110320.8Link to Ensembl Protein Viewer:ENSMUSP00000105949.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110320Re-query CCDS DB by Protein ID:ENSMUSP00000105949
Original member Current member NCBI NM_178404.3 NP_848491.2 Accepted alive Link to Nucleotide Sequence:NM_178404.3Link to Protein Sequence:NP_848491.2Re-query CCDS DB by Nucleotide ID:NM_178404Re-query CCDS DB by Protein ID:NP_848491Link to BLAST:NP_848491.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848491.2 1177 Q8BYK8-1 1177 99.5752% 0 5

Chromosomal Locations for CCDS 50707.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 128967805 128967836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128991091 128991271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128993159 128993281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128997605 128997872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129002142 129002278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129005996 129006112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129006713 129006824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129010416 129010525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129011667 129011920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129014336 129014838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129015400 129015633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129016122 129017584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3534 nt):
ATGACAGACTCTGAACATGCAGGGCACGACAGAGAAGATGGTGAATTAGAAGATGGAGAAATAGATGATG
CAGGATTTGAAGAAACACAAGATCAGGAAGCAAAAGAAAATGAAAAGCAAAAAAATGAGAAAGCCTACAG
AAAATCAAGGAAAAAACACAAGAAAGAAAGAGAAAAGAAAAAATCCAAAAGGAGGAAACACGAGAAACAT
AAGCATAACTCTCCATCTGGTGATGATAGTTCTGACTACAGCCTGGACTCAGATGTTGAACGTATGCAAA
GTTCCCGTAAGAAAAGAACCAGCTCCTACAGGGATTATGATGTTCCATTTTCTCAGCATAGACGTATATC
AGGAAGTTACATGACATCAAAGAAGAGTCAACATAACAAAAAAACTAATAGTAAAGAATATGCTGAGTCC
AGTTTCTACAGTGATGACTACTTTGGTAACTACAGTGATGACAACTTTGGTAACTATAGTAACCAGGAAG
GAGAAGAAGATTTCTCCAGTCAGCTGAAATACTATCGACAGTCCCAGGAGTCCTCAGGGTCATCGTTCTC
TAAGGAATCAGGGAAGAAACTGAGAAGTAAAGGAAGCCCACCAGGAACTGAATATCGGATTAAAAGTTTT
GATGTTAGTCATGGACATCTTTTGCCGAAGAAAATCAGAAGAAAAGAACACTGTGGGGCACGAGTCATTA
AAGGGCCTTATGTCTTTTCAGGAATGGATGACTTTCAAGAGTACAGCAAACCAGGGAAAAAGTGGAAAGT
TATGACTCAGGAGTTTATTAACCAGCACACAGTGGAACACAAAGGAAAACAGATCTGTAAATACTTCCTG
GAAGGGAGATGTATTAAGGGAGATCATTGTAAATTTAATCATGATGCAGAATTGGAGAAGAAAAAGGAGG
TCTGCAAATATTATTTACAGGGATATTGTACCAAAGGAGAGAACTGCATTTACATGCATAGTGAATTTCC
TTGCAAGTTCTATCATAGTGGAGCAAAGTGCTACCAAGGAGACAAGTGTAAGTTTTCCCATGATGATCTG
ACTAAAGAAACAAGGAAACTTTTGGACAAAGTGTTGAATGCGGATGAAGAACTTGTAAATGAAGACGAAA
GAGAATTAGAAGAACTTAGGAAACGCGGCATAACTCCTCTCCCCAAACCACCCCCGGGAGTCGGCCTTCT
CCCGACCCCATCAGAGCATTTTCCGTTTTCTGATCCTGAAGATGATTTTGAGACGGATCTTTCTGATGAT
ATGAAGAAAATTCCATCTCTTTTTGAAATAGTTGTAAAACCTACTGTGGATTTAGCACATAAAATTGGGA
AGAAACCACCAGCATTTTACAACAGTACCTCACCACCAGGACCACAGTTTGAGGAAAGCAGTCACTGTCC
ACAGCGTATGTACAGTTCTGAGTCAAGTCCAGGTCCAGGATCTAAAGTTCCTCAAGGATGTGAGAGTCCT
GTGAGGCACCCAGGCTCCCCTGGACACCACCCTTGTGTAGGACCTCCTGGTCCACCAATGCAAGAGAACC
CATCTTTGCTACCCAGTTCATCTGAAATTGTAGGCCCTCATAGTCAAGCTGGAGGGCTTGTTCAGCTGGA
CACGCTACCAAGCATGGGTGGAGCTTACCATTCCCCGGGCTTTCCAGGACACTCGGTGAAAGTCCCTAGA
GAGAGTCACAGCTCTCCAGCTTCACTGTACCAGCAAATGCCTAGTGAGATGCAACGCAGTGCCGACTCTG
AGTCCATGCAAGGCTCAGCTGAATTTTATGATGATTACTACCCACAGCATGCTGCACATAATTTTCAACC
ACCTGATAACTCTGCTGATGAGATGTGGCATGAAGAGTTTGCACAGCAGCAGCCTCCCATTGCTCGTGAC
ACAGCACACCTTGGGAGTGGGCCCAATTCCAGCAGCAGAATGACAAGTCACTGCCCTCTGTCTGCTTCAG
GGCTCCCTCCTGCAGTGCAGAGAGCTCTTTTCATCCCGTTGACTCAGAGATACCAAGAAGATGAAGAACC
AGCTGGCACCCAGCCTCATAGAGCATCAAGCAAGGAAGAAGATGATACAGCTAACTGGTATTCCAGTAGT
GAAGAGGAAGAAGGAAGTGGTGTCAAGTCAATACTGAGGACATTACAGAAACAAACAGGAACACTGAGAA
ACCAGCAACTCCCTCCCACAGAGCTCAGCGTTCCTACTGATCCAAGACTCGCTAAAGAGAAAAGGAAAAG
AAATCAAGTGGTTGACCCAAGACTTCGGACTGTCCCAAGGCAAGATATTAAAAAGCCGCATGAGTCTGTC
CCAGTGGACCTTAGACTTGTGTGGGACCCCAAGAAATTAAGAGGGAATGGAGGTGCTCCTGGGGGCTCTT
CAGCTAGGGGAGCAGAGTTTGACTTACGTCATACAAATGCTGGTGCAAATCACAAATCCAAAAGAAGAGA
GGATGATGATGAAGATTCAGAAAGAGAACTAAGAGAAAAGGCCTTCTTAATACCTTTGGATTCTTCACCT
GGCATAGTCCTCCAGGATCCAAGGTCACAGTTAAGACAATTCAGTCATATTAAAATGGACATTATTCTAA
ACAAACCCAACTTTGCAAAACACATTGTGTGGGCTCCAGAAGACTTACTTCCAGTACCTTTACCTAAACC
TGATCCAGTATCTTCAATCAACTTACCTCTGCCCCCACTTATAGCTGACCAGAGGCTCAATAGATTATGG
AATACAAAGAGTGATCATCAGGGTGCCCTGAGCCTTGATCCAACATCAGCAGCCAAAGCCAAACTGAGTC
TAACACACAGAGAGGGCTGCTTAGAGCAGTCTGGAGACTTACACAGTTCAGGAGGTAAACTAGGAGACCC
TAGGCTGCAAAAGAATTTTGATCCTAGGCTTCATAGACTGCCCAATACAGAGTCTCATCAAGTGACTGCA
AAGGATTCACACTCATCAAGGAGTGCCCTGCCCTTAGCCAGATGGAACCCTGCTTTGTCACAGTCCTCAA
CAGCAGCACCTATTAATGTTGCTTCTGTGACTCCTCCCCTGTATGCCCCCAAACTCTCTTCAGAAGGCCT
CCCACCGGGAACTTCAAGTTCAGTTCTTAGTGGCATTAGTTTGTATGATCCTAGGGATAAAGGTTCGTTA
TCTGCAATGGAGCTATCAACCATTTCTTCAGGAGAAAATACAGAGAGCCAGAAAAAAAGTGGCTTAAAAA
ATAGTGATAAAAACCAGCCTTCTCCTGGAGAAGTGATCGTACCACAGAACACTACTGCAAACTTGGAAGT
CCCTGTTGATGGGCCAGTAGACATGCAGACAGATATTCTCAGGAGTGCTGATAAGGTTCAGGTCCCTGCT
GTGCACAGTCTTCCTATTCAGGCCTTAACAGGCTTACTTAGACCTCCATACAGTGATCCAAGGCAGGCAA
GAGAACCAGGACAGGCAAGCCCAACCCCAGATGAAGAAACAGATGACAAACCTCTGAAAGAGGTTTTTAA
GACGTTTGATCCAACTGCATCACCGTTTTGTTAG

Translation (1177 aa):
MTDSEHAGHDREDGELEDGEIDDAGFEETQDQEAKENEKQKNEKAYRKSRKKHKKEREKKKSKRRKHEKH
KHNSPSGDDSSDYSLDSDVERMQSSRKKRTSSYRDYDVPFSQHRRISGSYMTSKKSQHNKKTNSKEYAES
SFYSDDYFGNYSDDNFGNYSNQEGEEDFSSQLKYYRQSQESSGSSFSKESGKKLRSKGSPPGTEYRIKSF
DVSHGHLLPKKIRRKEHCGARVIKGPYVFSGMDDFQEYSKPGKKWKVMTQEFINQHTVEHKGKQICKYFL
EGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMHSEFPCKFYHSGAKCYQGDKCKFSHDDL
TKETRKLLDKVLNADEELVNEDERELEELRKRGITPLPKPPPGVGLLPTPSEHFPFSDPEDDFETDLSDD
MKKIPSLFEIVVKPTVDLAHKIGKKPPAFYNSTSPPGPQFEESSHCPQRMYSSESSPGPGSKVPQGCESP
VRHPGSPGHHPCVGPPGPPMQENPSLLPSSSEIVGPHSQAGGLVQLDTLPSMGGAYHSPGFPGHSVKVPR
ESHSSPASLYQQMPSEMQRSADSESMQGSAEFYDDYYPQHAAHNFQPPDNSADEMWHEEFAQQQPPIARD
TAHLGSGPNSSSRMTSHCPLSASGLPPAVQRALFIPLTQRYQEDEEPAGTQPHRASSKEEDDTANWYSSS
EEEEGSGVKSILRTLQKQTGTLRNQQLPPTELSVPTDPRLAKEKRKRNQVVDPRLRTVPRQDIKKPHESV
PVDLRLVWDPKKLRGNGGAPGGSSARGAEFDLRHTNAGANHKSKRREDDDEDSERELREKAFLIPLDSSP
GIVLQDPRSQLRQFSHIKMDIILNKPNFAKHIVWAPEDLLPVPLPKPDPVSSINLPLPPLIADQRLNRLW
NTKSDHQGALSLDPTSAAKAKLSLTHREGCLEQSGDLHSSGGKLGDPRLQKNFDPRLHRLPNTESHQVTA
KDSHSSRSALPLARWNPALSQSSTAAPINVASVTPPLYAPKLSSEGLPPGTSSSVLSGISLYDPRDKGSL
SAMELSTISSGENTESQKKSGLKNSDKNQPSPGEVIVPQNTTANLEVPVDGPVDMQTDILRSADKVQVPA
VHSLPIQALTGLLRPPYSDPRQAREPGQASPTPDEETDDKPLKEVFKTFDPTASPFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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