NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30393.1 Public Mus musculus X Cenpi 23 108 98 CCDS HistoryNCBI Gene:102920Re-query CCDS DB by CCDS ID:30393.1Re-query CCDS DB by GeneID:102920See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081064.11 ENSMUSP00000079851.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081064.11Link to Ensembl Protein Viewer:ENSMUSP00000079851.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081064Re-query CCDS DB by Protein ID:ENSMUSP00000079851
Original member Current member EBI ENSMUST00000101251.7 ENSMUSP00000098809.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101251.7Link to Ensembl Protein Viewer:ENSMUSP00000098809.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101251Re-query CCDS DB by Protein ID:ENSMUSP00000098809
Original member Current member NCBI NM_001305631.1 NP_001292560.1 Accepted alive Link to Nucleotide Sequence:NM_001305631.1Link to Protein Sequence:NP_001292560.1Re-query CCDS DB by Nucleotide ID:NM_001305631Re-query CCDS DB by Protein ID:NP_001292560Link to BLAST:NP_001292560.1
Original member Current member NCBI NM_145924.3 NP_666036.1 Accepted alive Link to Nucleotide Sequence:NM_145924.3Link to Protein Sequence:NP_666036.1Re-query CCDS DB by Nucleotide ID:NM_145924Re-query CCDS DB by Protein ID:NP_666036Link to BLAST:NP_666036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292560.1 746 Q8K1K4 746 100% 0 0
NP_666036.1 746 Q8K1K4 746 100% 0 0

Chromosomal Locations for CCDS 30393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134310156 134310372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134311991 134312128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134317611 134317729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134318025 134318132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134324761 134324809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134325091 134325137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134336085 134336174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134336511 134336639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134337210 134337371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134337603 134337723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134338754 134338845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134339834 134339951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134340348 134340412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134343076 134343170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134347225 134347360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134349160 134349284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134351067 134351115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134351245 134351463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134361215 134361256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134361883 134362002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGGCAACTCAAAGGGTTACTAGAAACTCCCAGCAACAAAACAGAATTTCTCAAGGCAGTAATAGCCGTC
AAACCAGTCTCTTAGACTGGATGGTGAAAGACAAATCAGGCAACTTCAAGAGTGTCTTGAAAGAAAGCAG
TTCAGTGGAAGATTCTACACGCACTGATGATCGAACTGAAGGTGCTCTGCAGGTAGCAGTAGGATACTTC
CAGAAAGGTCCTAAGAAAGCTTCACTAAGTAAAGATAAGGTCTTGGAAAAACACTTGACAACTGTTGAAA
ATGTGGCTTTGAGCAATGGCTTAGCTCCAGAGGCAATTGATATTTTACTGAATGTGGCACTCAGTGGCAA
GTTTGGGAATGCTGTAAACTCACGGATATTGAAGTGCATGATTCCAGAAAGTCACATATCAGAAGATTCC
GTGCTTAAAGCAGTATCCTGGCTCTGTGTTGACAAGTGTTCTGGTAATACCAAGGTACTTTTTTATCGTT
GGTTGGTTGCGATGTTTGACTTTATTGATCATAAGAAGCAAATTAGTTCTCTGTATGGCTTCTTTTTTGC
TTCATTGCAAGATGATACTCTGTGCCCGTACGTTTGCCATTTGTTATATTTACTGACCAAAAGGGAGAAT
GTCAAACCATTTCGTGTGAGAAAATTGCTCGATCTCCAGGCCAAAATGGGAATGCAGCCCCACCTCCAGG
CTTTGTTGTCGCTGTATAAGTTCTTCGCTCCTACTTTGATTTCTGTATCTTTGCCTGTAAGGAAGAAGAT
CTTTTTCAATAATTCAAAAAATCTGTGGACTTCAGCTTCCCTTGCTGTGAGGCTAAGGAACCAGGGAGCT
TTTCCAGAACCTCTAAACCTTCCATTACGCCCAACTACGGGCCGTTCTCTAAAGAGGAAATGGAATTCTC
ACTCAGTTATACCAGCACTAAATTCTGCTAACAAAGAATATGGAGAGAAGACGGCGAGTCTGTTTGATTA
TCTCAGCAGTGAAAGATCACTTCCACTAGAACAGCTTCAACGTTTCCCTCAGCTTTTAGAGAGCATCCAT
TGTTTAGAGCTCCCTTCTCAGATGTGCTCAGTGCTAAACAGCCCTCTGCTACTTCACTATATTAATTGTG
TCAAAGATGAGTCAATCTTACTGAGGATCTCTTATTGGTTGAGTCAAGCATTACAAGAAGAATGTGTGTG
GTATAATATAAATAATTATGAACAAGAAAAGGAATTTATAAACTTTCTGGACCTGGTCATCAGGGTACAG
TGCTTCTTACAAGAGGGATTTTACTCCTGTGAGGCATTCCTGTATAAAAGCCTGCCTCTCTGGGATGGCT
CCTCTTGTCGGTCACAGTACCTTCAGCTTCTGGCCTGGATTCCATTCAGTAGCTTCTCTGAGGTGAAGCC
ACTTCTTTCTGATCATCTAGCACCTCTCTTCTTTACATCAAGTATTTATTTCAAGTGTAGTGTTCTTCAA
AGTCTGCAAGAATTACTGCAGAATTGGCTGCTTTGGCTCTCTACGGATGCGCATGTGCAGCCCACGACAG
ACAGTCCTCTGGAGACAACTCTGGGTGGATCCATGAGTTCTGTGTCTCAATTGATTGAGTACACAGGCTG
GCTGTGCGTGGTTGCAATGCGCTTGGAGAGCAGCAGTACATTGTTGTTGCACTTTATTTTGGACTTCTAT
GAGAAGGTGTGTGATATATATATAAATTATGACCTTCCGATAGTGGTATTGTTTCCTCCTGTGATCTTCC
ATTCTGCACTCCTAAGCCTGGATGCCACCATCTTGAACCAACTCTGTTACATTATGTACAGGTATCGCAA
TAATTGGACAGCTGCGAAGAAAAACCGCTATTTACAGAAGGCCAAACCAGAGTTCAGTCTCAGCAGCAAG
ATCTGTAAAGAGTATAATTACTATTTGACAGCTATGGTTTGTTGTCTATGGACGTCCAGACCATTTAAAG
CAGGAGTGTACACTGACCCCGAAACCATAGAAAATACTGGAGGAACACAGTATAAAAGCACCTTAAATAT
TGTCTACCATCCTTCTCTACTGAGCTATGCAGCTTCCTTCTTGCTACAGGAGAGCCCAGAAGAAATGACA
GAACACCTGAGCTCTATTCAGGGGAAGAAATGGAACTGGTATTTGGACTATTTATATTCAGAGGGTTTTC
AGGGCTTAAAACTTTTCATAAAAAGCAGTGTCCATAGTTCTGTACCCAAACCAGAGGAAAACACAGAGTG
A

Translation (746 aa):
MATQRVTRNSQQQNRISQGSNSRQTSLLDWMVKDKSGNFKSVLKESSSVEDSTRTDDRTEGALQVAVGYF
QKGPKKASLSKDKVLEKHLTTVENVALSNGLAPEAIDILLNVALSGKFGNAVNSRILKCMIPESHISEDS
VLKAVSWLCVDKCSGNTKVLFYRWLVAMFDFIDHKKQISSLYGFFFASLQDDTLCPYVCHLLYLLTKREN
VKPFRVRKLLDLQAKMGMQPHLQALLSLYKFFAPTLISVSLPVRKKIFFNNSKNLWTSASLAVRLRNQGA
FPEPLNLPLRPTTGRSLKRKWNSHSVIPALNSANKEYGEKTASLFDYLSSERSLPLEQLQRFPQLLESIH
CLELPSQMCSVLNSPLLLHYINCVKDESILLRISYWLSQALQEECVWYNINNYEQEKEFINFLDLVIRVQ
CFLQEGFYSCEAFLYKSLPLWDGSSCRSQYLQLLAWIPFSSFSEVKPLLSDHLAPLFFTSSIYFKCSVLQ
SLQELLQNWLLWLSTDAHVQPTTDSPLETTLGGSMSSVSQLIEYTGWLCVVAMRLESSSTLLLHFILDFY
EKVCDIYINYDLPIVVLFPPVIFHSALLSLDATILNQLCYIMYRYRNNWTAAKKNRYLQKAKPEFSLSSK
ICKEYNYYLTAMVCCLWTSRPFKAGVYTDPETIENTGGTQYKSTLNIVYHPSLLSYAASFLLQESPEEMT
EHLSSIQGKKWNWYLDYLYSEGFQGLKLFIKSSVHSSVPKPEENTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH