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Report for CCDS27309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27309.1 Public Mus musculus 14 Bora 23 108 98 CCDS HistoryNCBI Gene:77744Re-query CCDS DB by CCDS ID:27309.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022656.7 ENSMUSP00000022656.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022656.7Link to Ensembl Protein Viewer:ENSMUSP00000022656.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022656Re-query CCDS DB by Protein ID:ENSMUSP00000022656
Original member NCBI NM_175265.5 NP_780474.1 Updated not alive Link to Nucleotide Sequence:NM_175265.5Link to Protein Sequence:NP_780474.1Re-query CCDS DB by Nucleotide ID:NM_175265Re-query CCDS DB by Protein ID:NP_780474
Current member NCBI NM_175265.6 NP_780474.1 Accepted alive Link to Nucleotide Sequence:NM_175265.6Link to Protein Sequence:NP_780474.1Re-query CCDS DB by Nucleotide ID:NM_175265Re-query CCDS DB by Protein ID:NP_780474Link to BLAST:NP_780474.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780474.1 525 Q8BS90-1 525 100% 0 0

Chromosomal Locations for CCDS 27309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 99047316 99047468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99049993 99050099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99053518 99053563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99056739 99056820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99060240 99060305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99060975 99061031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99061520 99061683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99062269 99062404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99068008 99068561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99072602 99072748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99073646 99073711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGGAGATGTCAGCGAATTAAAAATGCAAATAACACCAGAAACTCCAGGAAGGATCCCTGTTTTAAATC
CCTTTGAAAGTCCCAGTGATTATTCTAATCTCCATGAACAAACCCTTGCTAGTCCTTCTATCTTTAAGTC
CACAAAACTACCAACTCCAGGGAAATTTAGGTGGTCTATTGATCAGCTGGCCATAATAAACCCTGTAGAG
ATCGATCCAGAGGAGATCCATCGGCAGGCTTCCTACCTAAGGCTTTCTCGAATAGATAAAGATGTGGAAG
ACAAAAGACAAAAAGCCATTGAAGAGTTTTTTACTAAAGATGTCATTGTGCCCTCTCCCTGGACTGATCA
TGATGGAAAACAGCCTTCAGAGCTTCATCCCAGTAAATGCCTAAGTAGCCATGATGACTCTCCTGATGGG
AAAAAGCCAAGTCTTCCCTCACAGAAGTGCAACGCTGCCTGCCAGACTCTGCTGTCTCTTCCTGTGGATT
TTAATTTGGAAGCCATATTAGGAGACTATTTTAGAGAAGAGGACTTTGTGGCCCACACTCCTGGGAACCT
CAGTTCTTCATCTCTGAGAAGAAAGCTCTTTTTGGATGGGAATGGAAGCATCTGTGACCCTTTGCCTTCG
CCGTCGCCCGGAAGTCCTCCCTGCAGTGCCCGGGGGTCGCTCGAGGGACAGTTTTCTTCCAGCCCCATTC
AGAACAGTGTGAAAAAATACAGCTTGGGAAGCGTCACCACGAGCCCGTCGGCCATCTCCTCACCTACCTT
CTCACCTATCGCACTTCAAGGAGGAAAGACGCCGCTCTCAGAACCCAGGAAGCTTACGTTTCATTCTCCC
GAAGCTTCGTGTGCAACAGCTTCTACGGGGATCGTTAACCCGAGCATCAGGAGTCCGTACATAGATGGCT
GCTCGCCAATCAAAAACTGGTCTCCTCGGAGACTGAGAGGTGGCCCTCAGTGTTTGTCCTCCCTGGTCCG
CATACCTTTTACCCTTGAGGCTCACAGTGAAGATGAAGAGGCGGACGTTTCCTGCACAGGCGCGGCTCCA
CTCAGCACAAATGCTTGTGGTGAGCCTCGAGTTGTCACTGCCATGTCTGTTACACAGAGTCACTCTGGTA
TTGCTGAGAAAGAGCGAGCAGTGCTGGACGATGCGGAAAGTGAGAGGGAAAATGACACCGTGGATATGGT
CGATCCTACAGACACAGTAGCTGAAAGCACGTGGATAAAAGAGCCAGTGGATGATGGGAATTCACCCATG
ACGGATTCCGCGAGTGGAATTGCCTTCAGTATTGAAAACTCTCATATGTGCATGTCGCCTCTTGCAGAAA
GCAGTGTCCTGCCTTATGAAAGCAGTGCTATCCAGATGAATAGTGACTATAACACACAGACTTGTGTAAG
TAATATCACTGATATTGTTGGGACAGAAAGATATTGCAAAGAAAATGTCACACATACAAATGTTCCAGTG
CCCTTTGAAGTGGAAATGAAATCTCAAGTTAATAACGTAACGCCCGGCCACACAGCGCAGCGGTGCTGGA
TGAAATCTCCGCGTCCATCTCAGTGCAGCCGCCCGTAG

Translation (525 aa):
MGDVSELKMQITPETPGRIPVLNPFESPSDYSNLHEQTLASPSIFKSTKLPTPGKFRWSIDQLAIINPVE
IDPEEIHRQASYLRLSRIDKDVEDKRQKAIEEFFTKDVIVPSPWTDHDGKQPSELHPSKCLSSHDDSPDG
KKPSLPSQKCNAACQTLLSLPVDFNLEAILGDYFREEDFVAHTPGNLSSSSLRRKLFLDGNGSICDPLPS
PSPGSPPCSARGSLEGQFSSSPIQNSVKKYSLGSVTTSPSAISSPTFSPIALQGGKTPLSEPRKLTFHSP
EASCATASTGIVNPSIRSPYIDGCSPIKNWSPRRLRGGPQCLSSLVRIPFTLEAHSEDEEADVSCTGAAP
LSTNACGEPRVVTAMSVTQSHSGIAEKERAVLDDAESERENDTVDMVDPTDTVAESTWIKEPVDDGNSPM
TDSASGIAFSIENSHMCMSPLAESSVLPYESSAIQMNSDYNTQTCVSNITDIVGTERYCKENVTHTNVPV
PFEVEMKSQVNNVTPGHTAQRCWMKSPRPSQCSRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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