NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80833.1 Public Mus musculus 7 Krtap5-3 23 108 98 CCDS HistoryNCBI Gene:77215Re-query CCDS DB by CCDS ID:80833.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187512.1 ENSMUSP00000141116.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187512.1Link to Ensembl Protein Viewer:ENSMUSP00000141116.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187512Re-query CCDS DB by Protein ID:ENSMUSP00000141116
Original member Current member NCBI NM_023860.1 NP_076349.1 Accepted alive Link to Nucleotide Sequence:NM_023860.1Link to Protein Sequence:NP_076349.1Re-query CCDS DB by Nucleotide ID:NM_023860Re-query CCDS DB by Protein ID:NP_076349Link to BLAST:NP_076349.1

Chromosomal Locations for CCDS 80833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142201428 142202498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGAGCTGCTGTGGCTGTTGTGGAGGCTGTGGCTCCAGCTGCTGCAAGCCTGTGTGCTGTTGTGTGCCTG
TCTGTTCCTGCTCCAGCTGTGGGGGCTGCAAGGGAGGCTGTAGTTCCTGTGGAGGCTGTGGCTCCTGTGG
GGGCTGCAAGGGAGGCTGTGGTTCCTGTGGAGGCTGTGGTTCCTGTGGGGGCTGCAAGGGAGGCTGTGGT
TCCTGTGGAGGCTGTGGCTCCTGTGGGGGCTGCAAGGGAGGCTGTGGTTCCTGTGGAGGCTGTGGTTCCT
GTGGGGGCTGCAAGGGAGGCTGTGGTTCCTGTGGAGGCTGTGGCTCCTGTGGGGGCTGCAAGGGAGGCTG
TAGTTCCTGTGGAGGCTGTGGCTCCTGTGGGGGCTGCAAGGGAGGCTGTGGTTCCTGTGGAGGCTGTGGC
TCCTGTGGGGGCTGCAAGGGAGGCTGTGGTTCCTGTGGAGGCTGTGGCTCCTGTGGGGGCTGCAAGGGAG
GCTGTGGTTCCTGTGGAGGCTGTGGCTCCTGTGGGGGCTGCAAGGGAGGCTGTGGTTCCTGTGGAGGCTG
TGGCTCCTGTGGGGGCTGCAAGGGAGGCTGTTGTTCCTGTGGAGGCTGTGGCTCTTGTGGAGGCTGCAAG
GGAGGCTGTAGTTCCTGTGGAGGCTGTGGCTCCTGTGGGGGCTGCAAGGGAGGCTGTTGTTCCTGTGGAG
GCTGTGGCTCTTGTGGAGGCTGCAAGGGAGGCTGTAGTTCCTGTGGAGGCTGTGGCACCTGTGGTGGCTG
CAAGGGATGCTGTAGTTCCTGTGGAGGCTGTGGCTCCTGTGGGGGCTGTGGCTCCTGTGGGGGCTGCAAG
GGAGGGTGTGGCTCCTGTGGAGGCTGTGGCTCTTGTGGAGGCTGCAAGGGAGGCTGTGGCTCCTGTGGAG
GCTGCAAGGGAGGCTGTAGTTCCTGTGGAGGCTGTGGCTCCTGTGGTTGCTGCCAGTCCAGCTGTTGTAA
GCCCTGCTGCTGCCAGTCCAGCTGTTGCAAGCCCTGCTGCTGCCAGTCCAGCTGTTGCAAGCCCTGCTGC
TGCCAGCCCAGCTGTTGCTAG

Translation (356 aa):
MSCCGCCGGCGSSCCKPVCCCVPVCSCSSCGGCKGGCSSCGGCGSCGGCKGGCGSCGGCGSCGGCKGGCG
SCGGCGSCGGCKGGCGSCGGCGSCGGCKGGCGSCGGCGSCGGCKGGCSSCGGCGSCGGCKGGCGSCGGCG
SCGGCKGGCGSCGGCGSCGGCKGGCGSCGGCGSCGGCKGGCGSCGGCGSCGGCKGGCCSCGGCGSCGGCK
GGCSSCGGCGSCGGCKGGCCSCGGCGSCGGCKGGCSSCGGCGTCGGCKGCCSSCGGCGSCGGCGSCGGCK
GGCGSCGGCGSCGGCKGGCGSCGGCKGGCSSCGGCGSCGCCQSSCCKPCCCQSSCCKPCCCQSSCCKPCC
CQPSCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH