NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49280.1 Public Mus musculus 13 Hnrnpa0 23 108 98 CCDS HistoryNCBI Gene:77134Re-query CCDS DB by CCDS ID:49280.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007980.6 ENSMUSP00000007980.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007980.6Link to Ensembl Protein Viewer:ENSMUSP00000007980.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000007980Re-query CCDS DB by Protein ID:ENSMUSP00000007980
Original member Current member NCBI NM_029872.1 NP_084148.1 Accepted alive Link to Nucleotide Sequence:NM_029872.1Link to Protein Sequence:NP_084148.1Re-query CCDS DB by Nucleotide ID:NM_029872Re-query CCDS DB by Protein ID:NP_084148Link to BLAST:NP_084148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084148.1 305 Q9CX86 305 100% 0 0

Chromosomal Locations for CCDS 49280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58127396 58128313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAGAACTCGCAGCTCTGTAAGCTGTTCATCGGCGGCCTCAATGTGCAGACGAGTGAGTCGGGGCTGC
GCGGCCACTTCGAGGCCTTCGGGACGCTGACGGACTGCGTGGTGGTGGTGAACCCCCAGACGAAGCGCTC
CCGCTGCTTCGGCTTCGTGACCTACTCGAACGTGGAGGAGGCGGATGCCGCCATGGCCGCGTCGCCGCAC
GCGGTGGACGGCAACACGGTGGAGCTGAAGCGCGCCGTGTCGCGGGAGGATTCGGCGCGGCCCGGGGCGC
ACGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAAGGGCGACGTGGCGGAGGGCGACCTGATCGAGCA
CTTCTCGCAGTTCGGCGCGGTGGAGAAGGCGGAGATCATTGCCGACAAGCAGTCGGGCAAGAAGCGCGGC
TTCGGCTTCGTCTACTTCCAGAGCCACGACGCGGCCGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCC
AGGGCCACCGCGTGGAGGTGAAGAAGGCGGTGCCCAAGGAGGATATCCACGCGGGCGGCGGGGGTGCGCG
GGCGGCCCGGGGCGGGCGCGGCGGAGGCCGGGGCCGCGGCGGCGGAGGCGGCGGCGGCGGCCGAGACCAG
AACGGGCTGGCCAAGGGCGGCGGTGGCGGCGGCGGCGGCTACAACAGCTACGGCGGCTACGGGGGCTACG
GCGCCTACGGGGGCGGTGGCGGCGGCGGCGGCTCATACGGCGGCAGCGACTACGGCAACGGCTTCGGCGG
CTTCGGCAGCTACAGCCAGCACCAGTCCTCGTACGGGCCGATGAAGAGCGGCGGAGGCGGCGGCGGCGGC
GGCAGCTGGGGCGGCCGCAGCAACAGTGGACCGTACAGAGGCGGCTACGGCGGCGGCTACGGCGGAGGCT
CGTTCTAG

Translation (305 aa):
MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPH
AVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRG
FGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGGGARAARGGRGGGRGRGGGGGGGGRDQ
NGLAKGGGGGGGGYNSYGGYGGYGAYGGGGGGGGSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGG
GSWGGRSNSGPYRGGYGGGYGGGSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH